compbio
DynamicSymmetry.h
1 // This file is part of Eigen, a lightweight C++ template library
2 // for linear algebra.
3 //
4 // Copyright (C) 2013 Christian Seiler <christian@iwakd.de>
5 //
6 // This Source Code Form is subject to the terms of the Mozilla
7 // Public License v. 2.0. If a copy of the MPL was not distributed
8 // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9 
10 #ifndef EIGEN_CXX11_TENSORSYMMETRY_DYNAMICSYMMETRY_H
11 #define EIGEN_CXX11_TENSORSYMMETRY_DYNAMICSYMMETRY_H
12 
13 namespace Eigen {
14 
16 {
17  public:
18  inline explicit DynamicSGroup() : m_numIndices(1), m_elements(), m_generators(), m_globalFlags(0) { m_elements.push_back(ge(Generator(0, 0, 0))); }
19  inline DynamicSGroup(const DynamicSGroup& o) : m_numIndices(o.m_numIndices), m_elements(o.m_elements), m_generators(o.m_generators), m_globalFlags(o.m_globalFlags) { }
20  inline DynamicSGroup(DynamicSGroup&& o) : m_numIndices(o.m_numIndices), m_elements(), m_generators(o.m_generators), m_globalFlags(o.m_globalFlags) { std::swap(m_elements, o.m_elements); }
21  inline DynamicSGroup& operator=(const DynamicSGroup& o) { m_numIndices = o.m_numIndices; m_elements = o.m_elements; m_generators = o.m_generators; m_globalFlags = o.m_globalFlags; return *this; }
22  inline DynamicSGroup& operator=(DynamicSGroup&& o) { m_numIndices = o.m_numIndices; std::swap(m_elements, o.m_elements); m_generators = o.m_generators; m_globalFlags = o.m_globalFlags; return *this; }
23 
24  void add(int one, int two, int flags = 0);
25 
26  template<typename Gen_>
27  inline void add(Gen_) { add(Gen_::One, Gen_::Two, Gen_::Flags); }
28  inline void addSymmetry(int one, int two) { add(one, two, 0); }
29  inline void addAntiSymmetry(int one, int two) { add(one, two, NegationFlag); }
30  inline void addHermiticity(int one, int two) { add(one, two, ConjugationFlag); }
31  inline void addAntiHermiticity(int one, int two) { add(one, two, NegationFlag | ConjugationFlag); }
32 
33  template<typename Op, typename RV, typename Index, std::size_t N, typename... Args>
34  inline RV apply(const std::array<Index, N>& idx, RV initial, Args&&... args) const
35  {
36  eigen_assert(N >= m_numIndices && "Can only apply symmetry group to objects that have at least the required amount of indices.");
37  for (std::size_t i = 0; i < size(); i++)
38  initial = Op::run(h_permute(i, idx, typename internal::gen_numeric_list<int, N>::type()), m_elements[i].flags, initial, std::forward<Args>(args)...);
39  return initial;
40  }
41 
42  template<typename Op, typename RV, typename Index, typename... Args>
43  inline RV apply(const std::vector<Index>& idx, RV initial, Args&&... args) const
44  {
45  eigen_assert(idx.size() >= m_numIndices && "Can only apply symmetry group to objects that have at least the required amount of indices.");
46  for (std::size_t i = 0; i < size(); i++)
47  initial = Op::run(h_permute(i, idx), m_elements[i].flags, initial, std::forward<Args>(args)...);
48  return initial;
49  }
50 
51  inline int globalFlags() const { return m_globalFlags; }
52  inline std::size_t size() const { return m_elements.size(); }
53 
54  template<typename Tensor_, typename... IndexTypes>
55  inline internal::tensor_symmetry_value_setter<Tensor_, DynamicSGroup> operator()(Tensor_& tensor, typename Tensor_::Index firstIndex, IndexTypes... otherIndices) const
56  {
57  static_assert(sizeof...(otherIndices) + 1 == Tensor_::NumIndices, "Number of indices used to access a tensor coefficient must be equal to the rank of the tensor.");
58  return operator()(tensor, std::array<typename Tensor_::Index, Tensor_::NumIndices>{{firstIndex, otherIndices...}});
59  }
60 
61  template<typename Tensor_>
62  inline internal::tensor_symmetry_value_setter<Tensor_, DynamicSGroup> operator()(Tensor_& tensor, std::array<typename Tensor_::Index, Tensor_::NumIndices> const& indices) const
63  {
65  }
66  private:
67  struct GroupElement {
68  std::vector<int> representation;
69  int flags;
70  bool isId() const
71  {
72  for (std::size_t i = 0; i < representation.size(); i++)
73  if (i != (size_t)representation[i])
74  return false;
75  return true;
76  }
77  };
78  struct Generator {
79  int one;
80  int two;
81  int flags;
82  constexpr inline Generator(int one_, int two_, int flags_) : one(one_), two(two_), flags(flags_) {}
83  };
84 
85  std::size_t m_numIndices;
86  std::vector<GroupElement> m_elements;
87  std::vector<Generator> m_generators;
88  int m_globalFlags;
89 
90  template<typename Index, std::size_t N, int... n>
91  inline std::array<Index, N> h_permute(std::size_t which, const std::array<Index, N>& idx, internal::numeric_list<int, n...>) const
92  {
93  return std::array<Index, N>{{ idx[n >= m_numIndices ? n : m_elements[which].representation[n]]... }};
94  }
95 
96  template<typename Index>
97  inline std::vector<Index> h_permute(std::size_t which, std::vector<Index> idx) const
98  {
99  std::vector<Index> result;
100  result.reserve(idx.size());
101  for (auto k : m_elements[which].representation)
102  result.push_back(idx[k]);
103  for (std::size_t i = m_numIndices; i < idx.size(); i++)
104  result.push_back(idx[i]);
105  return result;
106  }
107 
108  inline GroupElement ge(Generator const& g) const
109  {
110  GroupElement result;
111  result.representation.reserve(m_numIndices);
112  result.flags = g.flags;
113  for (std::size_t k = 0; k < m_numIndices; k++) {
114  if (k == (std::size_t)g.one)
115  result.representation.push_back(g.two);
116  else if (k == (std::size_t)g.two)
117  result.representation.push_back(g.one);
118  else
119  result.representation.push_back(int(k));
120  }
121  return result;
122  }
123 
124  GroupElement mul(GroupElement, GroupElement) const;
125  inline GroupElement mul(Generator g1, GroupElement g2) const
126  {
127  return mul(ge(g1), g2);
128  }
129 
130  inline GroupElement mul(GroupElement g1, Generator g2) const
131  {
132  return mul(g1, ge(g2));
133  }
134 
135  inline GroupElement mul(Generator g1, Generator g2) const
136  {
137  return mul(ge(g1), ge(g2));
138  }
139 
140  inline int findElement(GroupElement e) const
141  {
142  for (auto ee : m_elements) {
143  if (ee.representation == e.representation)
144  return ee.flags ^ e.flags;
145  }
146  return -1;
147  }
148 
149  void updateGlobalFlags(int flagDiffOfSameGenerator);
150 };
151 
152 // dynamic symmetry group that auto-adds the template parameters in the constructor
153 template<typename... Gen>
155 {
156  public:
158  {
159  add_all(internal::type_list<Gen...>());
160  }
163  inline DynamicSGroupFromTemplateArgs<Gen...>& operator=(const DynamicSGroupFromTemplateArgs<Gen...>& o) { DynamicSGroup::operator=(o); return *this; }
164  inline DynamicSGroupFromTemplateArgs<Gen...>& operator=(DynamicSGroupFromTemplateArgs<Gen...>&& o) { DynamicSGroup::operator=(o); return *this; }
165 
166  private:
167  template<typename Gen1, typename... GenNext>
168  inline void add_all(internal::type_list<Gen1, GenNext...>)
169  {
170  add(Gen1());
172  }
173 
174  inline void add_all(internal::type_list<>)
175  {
176  }
177 };
178 
179 inline DynamicSGroup::GroupElement DynamicSGroup::mul(GroupElement g1, GroupElement g2) const
180 {
181  eigen_internal_assert(g1.representation.size() == m_numIndices);
182  eigen_internal_assert(g2.representation.size() == m_numIndices);
183 
184  GroupElement result;
185  result.representation.reserve(m_numIndices);
186  for (std::size_t i = 0; i < m_numIndices; i++) {
187  int v = g2.representation[g1.representation[i]];
188  eigen_assert(v >= 0);
189  result.representation.push_back(v);
190  }
191  result.flags = g1.flags ^ g2.flags;
192  return result;
193 }
194 
195 inline void DynamicSGroup::add(int one, int two, int flags)
196 {
197  eigen_assert(one >= 0);
198  eigen_assert(two >= 0);
199  eigen_assert(one != two);
200 
201  if ((std::size_t)one >= m_numIndices || (std::size_t)two >= m_numIndices) {
202  std::size_t newNumIndices = (one > two) ? one : two + 1;
203  for (auto& gelem : m_elements) {
204  gelem.representation.reserve(newNumIndices);
205  for (std::size_t i = m_numIndices; i < newNumIndices; i++)
206  gelem.representation.push_back(i);
207  }
208  m_numIndices = newNumIndices;
209  }
210 
211  Generator g{one, two, flags};
212  GroupElement e = ge(g);
213 
214  /* special case for first generator */
215  if (m_elements.size() == 1) {
216  while (!e.isId()) {
217  m_elements.push_back(e);
218  e = mul(e, g);
219  }
220 
221  if (e.flags > 0)
222  updateGlobalFlags(e.flags);
223 
224  // only add in case we didn't have identity
225  if (m_elements.size() > 1)
226  m_generators.push_back(g);
227  return;
228  }
229 
230  int p = findElement(e);
231  if (p >= 0) {
232  updateGlobalFlags(p);
233  return;
234  }
235 
236  std::size_t coset_order = m_elements.size();
237  m_elements.push_back(e);
238  for (std::size_t i = 1; i < coset_order; i++)
239  m_elements.push_back(mul(m_elements[i], e));
240  m_generators.push_back(g);
241 
242  std::size_t coset_rep = coset_order;
243  do {
244  for (auto g : m_generators) {
245  e = mul(m_elements[coset_rep], g);
246  p = findElement(e);
247  if (p < 0) {
248  // element not yet in group
249  m_elements.push_back(e);
250  for (std::size_t i = 1; i < coset_order; i++)
251  m_elements.push_back(mul(m_elements[i], e));
252  } else if (p > 0) {
253  updateGlobalFlags(p);
254  }
255  }
256  coset_rep += coset_order;
257  } while (coset_rep < m_elements.size());
258 }
259 
260 inline void DynamicSGroup::updateGlobalFlags(int flagDiffOfSameGenerator)
261 {
262  switch (flagDiffOfSameGenerator) {
263  case 0:
264  default:
265  // nothing happened
266  break;
267  case NegationFlag:
268  // every element is it's own negative => whole tensor is zero
269  m_globalFlags |= GlobalZeroFlag;
270  break;
271  case ConjugationFlag:
272  // every element is it's own conjugate => whole tensor is real
273  m_globalFlags |= GlobalRealFlag;
274  break;
275  case (NegationFlag | ConjugationFlag):
276  // every element is it's own negative conjugate => whole tensor is imaginary
277  m_globalFlags |= GlobalImagFlag;
278  break;
279  /* NOTE:
280  * since GlobalZeroFlag == GlobalRealFlag | GlobalImagFlag, if one generator
281  * causes the tensor to be real and the next one to be imaginary, this will
282  * trivially give the correct result
283  */
284  }
285 }
286 
287 } // end namespace Eigen
288 
289 #endif // EIGEN_CXX11_TENSORSYMMETRY_DYNAMICSYMMETRY_H
290 
291 /*
292  * kate: space-indent on; indent-width 2; mixedindent off; indent-mode cstyle;
293  */
Definition: EmulateCXX11Meta.h:27
Namespace containing all symbols from the Eigen library.
Definition: bench_norm.cpp:85
EIGEN_DEFAULT_DENSE_INDEX_TYPE Index
The Index type as used for the API.
Definition: Meta.h:33
Dynamic symmetry group.
Definition: DynamicSymmetry.h:15
Definition: DynamicSymmetry.h:154