compbio
GeneralMatrixMatrixTriangular.h
1 // This file is part of Eigen, a lightweight C++ template library
2 // for linear algebra.
3 //
4 // Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
5 //
6 // This Source Code Form is subject to the terms of the Mozilla
7 // Public License v. 2.0. If a copy of the MPL was not distributed
8 // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9 
10 #ifndef EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
11 #define EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
12 
13 namespace Eigen {
14 
15 template<typename Scalar, typename Index, int StorageOrder, int UpLo, bool ConjLhs, bool ConjRhs>
17 
18 namespace internal {
19 
20 /**********************************************************************
21 * This file implements a general A * B product while
22 * evaluating only one triangular part of the product.
23 * This is a more general version of self adjoint product (C += A A^T)
24 * as the level 3 SYRK Blas routine.
25 **********************************************************************/
26 
27 // forward declarations (defined at the end of this file)
28 template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int UpLo>
29 struct tribb_kernel;
30 
31 /* Optimized matrix-matrix product evaluating only one triangular half */
32 template <typename Index,
33  typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
34  typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs,
35  int ResStorageOrder, int UpLo, int Version = Specialized>
37 
38 // as usual if the result is row major => we transpose the product
39 template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
40  typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs, int UpLo, int Version>
41 struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,RowMajor,UpLo,Version>
42 {
44  static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* lhs, Index lhsStride,
45  const RhsScalar* rhs, Index rhsStride, ResScalar* res, Index resStride,
46  const ResScalar& alpha, level3_blocking<RhsScalar,LhsScalar>& blocking)
47  {
49  RhsScalar, RhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateRhs,
50  LhsScalar, LhsStorageOrder==RowMajor ? ColMajor : RowMajor, ConjugateLhs,
51  ColMajor, UpLo==Lower?Upper:Lower>
52  ::run(size,depth,rhs,rhsStride,lhs,lhsStride,res,resStride,alpha,blocking);
53  }
54 };
55 
56 template <typename Index, typename LhsScalar, int LhsStorageOrder, bool ConjugateLhs,
57  typename RhsScalar, int RhsStorageOrder, bool ConjugateRhs, int UpLo, int Version>
58 struct general_matrix_matrix_triangular_product<Index,LhsScalar,LhsStorageOrder,ConjugateLhs,RhsScalar,RhsStorageOrder,ConjugateRhs,ColMajor,UpLo,Version>
59 {
61  static EIGEN_STRONG_INLINE void run(Index size, Index depth,const LhsScalar* _lhs, Index lhsStride,
62  const RhsScalar* _rhs, Index rhsStride, ResScalar* _res, Index resStride,
63  const ResScalar& alpha, level3_blocking<LhsScalar,RhsScalar>& blocking)
64  {
65  typedef gebp_traits<LhsScalar,RhsScalar> Traits;
66 
70  LhsMapper lhs(_lhs,lhsStride);
71  RhsMapper rhs(_rhs,rhsStride);
72  ResMapper res(_res, resStride);
73 
74  Index kc = blocking.kc();
75  Index mc = (std::min)(size,blocking.mc());
76 
77  // !!! mc must be a multiple of nr:
78  if(mc > Traits::nr)
79  mc = (mc/Traits::nr)*Traits::nr;
80 
81  std::size_t sizeA = kc*mc;
82  std::size_t sizeB = kc*size;
83 
84  ei_declare_aligned_stack_constructed_variable(LhsScalar, blockA, sizeA, blocking.blockA());
85  ei_declare_aligned_stack_constructed_variable(RhsScalar, blockB, sizeB, blocking.blockB());
86 
91 
92  for(Index k2=0; k2<depth; k2+=kc)
93  {
94  const Index actual_kc = (std::min)(k2+kc,depth)-k2;
95 
96  // note that the actual rhs is the transpose/adjoint of mat
97  pack_rhs(blockB, rhs.getSubMapper(k2,0), actual_kc, size);
98 
99  for(Index i2=0; i2<size; i2+=mc)
100  {
101  const Index actual_mc = (std::min)(i2+mc,size)-i2;
102 
103  pack_lhs(blockA, lhs.getSubMapper(i2, k2), actual_kc, actual_mc);
104 
105  // the selected actual_mc * size panel of res is split into three different part:
106  // 1 - before the diagonal => processed with gebp or skipped
107  // 2 - the actual_mc x actual_mc symmetric block => processed with a special kernel
108  // 3 - after the diagonal => processed with gebp or skipped
109  if (UpLo==Lower)
110  gebp(res.getSubMapper(i2, 0), blockA, blockB, actual_mc, actual_kc,
111  (std::min)(size,i2), alpha, -1, -1, 0, 0);
112 
113 
114  sybb(_res+resStride*i2 + i2, resStride, blockA, blockB + actual_kc*i2, actual_mc, actual_kc, alpha);
115 
116  if (UpLo==Upper)
117  {
118  Index j2 = i2+actual_mc;
119  gebp(res.getSubMapper(i2, j2), blockA, blockB+actual_kc*j2, actual_mc,
120  actual_kc, (std::max)(Index(0), size-j2), alpha, -1, -1, 0, 0);
121  }
122  }
123  }
124  }
125 };
126 
127 // Optimized packed Block * packed Block product kernel evaluating only one given triangular part
128 // This kernel is built on top of the gebp kernel:
129 // - the current destination block is processed per panel of actual_mc x BlockSize
130 // where BlockSize is set to the minimal value allowing gebp to be as fast as possible
131 // - then, as usual, each panel is split into three parts along the diagonal,
132 // the sub blocks above and below the diagonal are processed as usual,
133 // while the triangular block overlapping the diagonal is evaluated into a
134 // small temporary buffer which is then accumulated into the result using a
135 // triangular traversal.
136 template<typename LhsScalar, typename RhsScalar, typename Index, int mr, int nr, bool ConjLhs, bool ConjRhs, int UpLo>
137 struct tribb_kernel
138 {
140  typedef typename Traits::ResScalar ResScalar;
141 
142  enum {
144  };
145  void operator()(ResScalar* _res, Index resStride, const LhsScalar* blockA, const RhsScalar* blockB, Index size, Index depth, const ResScalar& alpha)
146  {
148  ResMapper res(_res, resStride);
150 
152 
153  // let's process the block per panel of actual_mc x BlockSize,
154  // again, each is split into three parts, etc.
155  for (Index j=0; j<size; j+=BlockSize)
156  {
157  Index actualBlockSize = std::min<Index>(BlockSize,size - j);
158  const RhsScalar* actual_b = blockB+j*depth;
159 
160  if(UpLo==Upper)
161  gebp_kernel(res.getSubMapper(0, j), blockA, actual_b, j, depth, actualBlockSize, alpha,
162  -1, -1, 0, 0);
163 
164  // selfadjoint micro block
165  {
166  Index i = j;
167  buffer.setZero();
168  // 1 - apply the kernel on the temporary buffer
169  gebp_kernel(ResMapper(buffer.data(), BlockSize), blockA+depth*i, actual_b, actualBlockSize, depth, actualBlockSize, alpha,
170  -1, -1, 0, 0);
171  // 2 - triangular accumulation
172  for(Index j1=0; j1<actualBlockSize; ++j1)
173  {
174  ResScalar* r = &res(i, j + j1);
175  for(Index i1=UpLo==Lower ? j1 : 0;
176  UpLo==Lower ? i1<actualBlockSize : i1<=j1; ++i1)
177  r[i1] += buffer(i1,j1);
178  }
179  }
180 
181  if(UpLo==Lower)
182  {
183  Index i = j+actualBlockSize;
184  gebp_kernel(res.getSubMapper(i, j), blockA+depth*i, actual_b, size-i,
185  depth, actualBlockSize, alpha, -1, -1, 0, 0);
186  }
187  }
188  }
189 };
190 
191 } // end namespace internal
192 
193 // high level API
194 
195 template<typename MatrixType, typename ProductType, int UpLo, bool IsOuterProduct>
197 
198 
199 template<typename MatrixType, typename ProductType, int UpLo>
200 struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,true>
201 {
202  static void run(MatrixType& mat, const ProductType& prod, const typename MatrixType::Scalar& alpha)
203  {
204  typedef typename MatrixType::Scalar Scalar;
205 
207  typedef internal::blas_traits<Lhs> LhsBlasTraits;
208  typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhs;
209  typedef typename internal::remove_all<ActualLhs>::type _ActualLhs;
210  typename internal::add_const_on_value_type<ActualLhs>::type actualLhs = LhsBlasTraits::extract(prod.lhs());
211 
213  typedef internal::blas_traits<Rhs> RhsBlasTraits;
214  typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhs;
215  typedef typename internal::remove_all<ActualRhs>::type _ActualRhs;
216  typename internal::add_const_on_value_type<ActualRhs>::type actualRhs = RhsBlasTraits::extract(prod.rhs());
217 
218  Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(prod.lhs().derived()) * RhsBlasTraits::extractScalarFactor(prod.rhs().derived());
219 
220  enum {
222  UseLhsDirectly = _ActualLhs::InnerStrideAtCompileTime==1,
223  UseRhsDirectly = _ActualRhs::InnerStrideAtCompileTime==1
224  };
225 
227  ei_declare_aligned_stack_constructed_variable(Scalar, actualLhsPtr, actualLhs.size(),
228  (UseLhsDirectly ? const_cast<Scalar*>(actualLhs.data()) : static_lhs.data()));
229  if(!UseLhsDirectly) Map<typename _ActualLhs::PlainObject>(actualLhsPtr, actualLhs.size()) = actualLhs;
230 
232  ei_declare_aligned_stack_constructed_variable(Scalar, actualRhsPtr, actualRhs.size(),
233  (UseRhsDirectly ? const_cast<Scalar*>(actualRhs.data()) : static_rhs.data()));
234  if(!UseRhsDirectly) Map<typename _ActualRhs::PlainObject>(actualRhsPtr, actualRhs.size()) = actualRhs;
235 
236 
237  selfadjoint_rank1_update<Scalar,Index,StorageOrder,UpLo,
238  LhsBlasTraits::NeedToConjugate && NumTraits<Scalar>::IsComplex,
239  RhsBlasTraits::NeedToConjugate && NumTraits<Scalar>::IsComplex>
240  ::run(actualLhs.size(), mat.data(), mat.outerStride(), actualLhsPtr, actualRhsPtr, actualAlpha);
241  }
242 };
243 
244 template<typename MatrixType, typename ProductType, int UpLo>
245 struct general_product_to_triangular_selector<MatrixType,ProductType,UpLo,false>
246 {
247  static void run(MatrixType& mat, const ProductType& prod, const typename MatrixType::Scalar& alpha)
248  {
250  typedef internal::blas_traits<Lhs> LhsBlasTraits;
251  typedef typename LhsBlasTraits::DirectLinearAccessType ActualLhs;
252  typedef typename internal::remove_all<ActualLhs>::type _ActualLhs;
253  typename internal::add_const_on_value_type<ActualLhs>::type actualLhs = LhsBlasTraits::extract(prod.lhs());
254 
256  typedef internal::blas_traits<Rhs> RhsBlasTraits;
257  typedef typename RhsBlasTraits::DirectLinearAccessType ActualRhs;
258  typedef typename internal::remove_all<ActualRhs>::type _ActualRhs;
259  typename internal::add_const_on_value_type<ActualRhs>::type actualRhs = RhsBlasTraits::extract(prod.rhs());
260 
261  typename ProductType::Scalar actualAlpha = alpha * LhsBlasTraits::extractScalarFactor(prod.lhs().derived()) * RhsBlasTraits::extractScalarFactor(prod.rhs().derived());
262 
263  enum {
264  IsRowMajor = (internal::traits<MatrixType>::Flags&RowMajorBit) ? 1 : 0,
265  LhsIsRowMajor = _ActualLhs::Flags&RowMajorBit ? 1 : 0,
266  RhsIsRowMajor = _ActualRhs::Flags&RowMajorBit ? 1 : 0
267  };
268 
269  Index size = mat.cols();
270  Index depth = actualLhs.cols();
271 
272  typedef internal::gemm_blocking_space<IsRowMajor ? RowMajor : ColMajor,typename Lhs::Scalar,typename Rhs::Scalar,
273  MatrixType::MaxColsAtCompileTime, MatrixType::MaxColsAtCompileTime, _ActualRhs::MaxColsAtCompileTime> BlockingType;
274 
275  BlockingType blocking(size, size, depth, 1, false);
276 
278  typename Lhs::Scalar, LhsIsRowMajor ? RowMajor : ColMajor, LhsBlasTraits::NeedToConjugate,
279  typename Rhs::Scalar, RhsIsRowMajor ? RowMajor : ColMajor, RhsBlasTraits::NeedToConjugate,
280  IsRowMajor ? RowMajor : ColMajor, UpLo>
281  ::run(size, depth,
282  &actualLhs.coeffRef(0,0), actualLhs.outerStride(), &actualRhs.coeffRef(0,0), actualRhs.outerStride(),
283  mat.data(), mat.outerStride(), actualAlpha, blocking);
284  }
285 };
286 
287 template<typename MatrixType, unsigned int UpLo>
288 template<typename ProductType>
290 {
291  eigen_assert(derived().nestedExpression().rows() == prod.rows() && derived().cols() == prod.cols());
292 
293  general_product_to_triangular_selector<MatrixType, ProductType, UpLo, internal::traits<ProductType>::InnerSize==1>::run(derived().nestedExpression().const_cast_derived(), prod, alpha);
294 
295  return derived();
296 }
297 
298 } // end namespace Eigen
299 
300 #endif // EIGEN_GENERAL_MATRIX_MATRIX_TRIANGULAR_H
Definition: BlasUtil.h:269
Storage order is column major (see TopicStorageOrders).
Definition: Constants.h:320
Definition: BlasUtil.h:28
EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const Scalar * data() const
Definition: PlainObjectBase.h:249
Definition: GeneralBlockPanelKernel.h:19
A matrix or vector expression mapping an existing array of data.
Definition: Map.h:88
Namespace containing all symbols from the Eigen library.
Definition: bench_norm.cpp:85
Definition: GeneralMatrixMatrixTriangular.h:16
Holds information about the various numeric (i.e.
Definition: NumTraits.h:150
const unsigned int RowMajorBit
for a matrix, this means that the storage order is row-major.
Definition: Constants.h:61
Definition: GeneralMatrixMatrix.h:17
View matrix as a lower triangular matrix.
Definition: Constants.h:204
EIGEN_DEFAULT_DENSE_INDEX_TYPE Index
The Index type as used for the API.
Definition: Meta.h:33
Definition: GeneralMatrixMatrixTriangular.h:36
Definition: BlasUtil.h:256
Definition: GeneralMatrixMatrixTriangular.h:196
Definition: GeneralProduct.h:146
EIGEN_DEVICE_FUNC Matrix< _Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols > & setZero(Index size)
Resizes to the given size, and sets all coefficients in this expression to zero.
Definition: CwiseNullaryOp.h:515
View matrix as an upper triangular matrix.
Definition: Constants.h:206
Definition: GeneralBlockPanelKernel.h:859
Definition: BlasUtil.h:192
Definition: BandTriangularSolver.h:13
Definition: TriangularMatrix.h:184
Storage order is row major (see TopicStorageOrders).
Definition: Constants.h:322
Expression of a triangular part in a matrix.
Definition: TriangularMatrix.h:186
Determines whether the given binary operation of two numeric types is allowed and what the scalar ret...
Definition: XprHelper.h:757
The matrix class, also used for vectors and row-vectors.
Definition: Matrix.h:178
Definition: GeneralMatrixMatrix.h:244
Definition: ForwardDeclarations.h:17
Definition: GeneralMatrixMatrixTriangular.h:29
Definition: BlasUtil.h:25