compbio
IO.h
1 // This file is part of Eigen, a lightweight C++ template library
2 // for linear algebra.
3 //
4 // Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
5 // Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
6 //
7 // This Source Code Form is subject to the terms of the Mozilla
8 // Public License v. 2.0. If a copy of the MPL was not distributed
9 // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
10 
11 #ifndef EIGEN_IO_H
12 #define EIGEN_IO_H
13 
14 namespace Eigen {
15 
16 enum { DontAlignCols = 1 };
17 enum { StreamPrecision = -1,
18  FullPrecision = -2 };
19 
20 namespace internal {
21 template<typename Derived>
22 std::ostream & print_matrix(std::ostream & s, const Derived& _m, const IOFormat& fmt);
23 }
24 
50 struct IOFormat
51 {
53  IOFormat(int _precision = StreamPrecision, int _flags = 0,
54  const std::string& _coeffSeparator = " ",
55  const std::string& _rowSeparator = "\n", const std::string& _rowPrefix="", const std::string& _rowSuffix="",
56  const std::string& _matPrefix="", const std::string& _matSuffix="")
57  : matPrefix(_matPrefix), matSuffix(_matSuffix), rowPrefix(_rowPrefix), rowSuffix(_rowSuffix), rowSeparator(_rowSeparator),
58  rowSpacer(""), coeffSeparator(_coeffSeparator), precision(_precision), flags(_flags)
59  {
60  // TODO check if rowPrefix, rowSuffix or rowSeparator contains a newline
61  // don't add rowSpacer if columns are not to be aligned
62  if((flags & DontAlignCols))
63  return;
64  int i = int(matSuffix.length())-1;
65  while (i>=0 && matSuffix[i]!='\n')
66  {
67  rowSpacer += ' ';
68  i--;
69  }
70  }
71  std::string matPrefix, matSuffix;
72  std::string rowPrefix, rowSuffix, rowSeparator, rowSpacer;
73  std::string coeffSeparator;
74  int precision;
75  int flags;
76 };
77 
93 template<typename ExpressionType>
95 {
96  public:
97 
98  WithFormat(const ExpressionType& matrix, const IOFormat& format)
99  : m_matrix(matrix), m_format(format)
100  {}
101 
102  friend std::ostream & operator << (std::ostream & s, const WithFormat& wf)
103  {
104  return internal::print_matrix(s, wf.m_matrix.eval(), wf.m_format);
105  }
106 
107  protected:
108  const typename ExpressionType::Nested m_matrix;
109  IOFormat m_format;
110 };
111 
119 template<typename Derived>
120 inline const WithFormat<Derived>
122 {
123  return WithFormat<Derived>(derived(), fmt);
124 }
125 
126 namespace internal {
127 
128 // NOTE: This helper is kept for backward compatibility with previous code specializing
129 // this internal::significant_decimals_impl structure. In the future we should directly
130 // call digits10() which has been introduced in July 2016 in 3.3.
131 template<typename Scalar>
133 {
134  static inline int run()
135  {
137  }
138 };
139 
142 template<typename Derived>
143 std::ostream & print_matrix(std::ostream & s, const Derived& _m, const IOFormat& fmt)
144 {
145  if(_m.size() == 0)
146  {
147  s << fmt.matPrefix << fmt.matSuffix;
148  return s;
149  }
150 
151  typename Derived::Nested m = _m;
152  typedef typename Derived::Scalar Scalar;
153 
154  Index width = 0;
155 
156  std::streamsize explicit_precision;
157  if(fmt.precision == StreamPrecision)
158  {
159  explicit_precision = 0;
160  }
161  else if(fmt.precision == FullPrecision)
162  {
164  {
165  explicit_precision = 0;
166  }
167  else
168  {
169  explicit_precision = significant_decimals_impl<Scalar>::run();
170  }
171  }
172  else
173  {
174  explicit_precision = fmt.precision;
175  }
176 
177  std::streamsize old_precision = 0;
178  if(explicit_precision) old_precision = s.precision(explicit_precision);
179 
180  bool align_cols = !(fmt.flags & DontAlignCols);
181  if(align_cols)
182  {
183  // compute the largest width
184  for(Index j = 0; j < m.cols(); ++j)
185  for(Index i = 0; i < m.rows(); ++i)
186  {
187  std::stringstream sstr;
188  sstr.copyfmt(s);
189  sstr << m.coeff(i,j);
190  width = std::max<Index>(width, Index(sstr.str().length()));
191  }
192  }
193  s << fmt.matPrefix;
194  for(Index i = 0; i < m.rows(); ++i)
195  {
196  if (i)
197  s << fmt.rowSpacer;
198  s << fmt.rowPrefix;
199  if(width) s.width(width);
200  s << m.coeff(i, 0);
201  for(Index j = 1; j < m.cols(); ++j)
202  {
203  s << fmt.coeffSeparator;
204  if (width) s.width(width);
205  s << m.coeff(i, j);
206  }
207  s << fmt.rowSuffix;
208  if( i < m.rows() - 1)
209  s << fmt.rowSeparator;
210  }
211  s << fmt.matSuffix;
212  if(explicit_precision) s.precision(old_precision);
213  return s;
214 }
215 
216 } // end namespace internal
217 
229 template<typename Derived>
230 std::ostream & operator <<
231 (std::ostream & s,
232  const DenseBase<Derived> & m)
233 {
234  return internal::print_matrix(s, m.eval(), EIGEN_DEFAULT_IO_FORMAT);
235 }
236 
237 } // end namespace Eigen
238 
239 #endif // EIGEN_IO_H
Namespace containing all symbols from the Eigen library.
Definition: bench_norm.cpp:85
Holds information about the various numeric (i.e.
Definition: NumTraits.h:150
Base class for all dense matrices, vectors, and arrays.
Definition: DenseBase.h:41
IOFormat(int _precision=StreamPrecision, int _flags=0, const std::string &_coeffSeparator=" ", const std::string &_rowSeparator="\, const std::string &_rowPrefix="", const std::string &_rowSuffix="", const std::string &_matPrefix="", const std::string &_matSuffix="")
Default constructor, see class IOFormat for the meaning of the parameters.
Definition: IO.h:53
EIGEN_DEFAULT_DENSE_INDEX_TYPE Index
The Index type as used for the API.
Definition: Meta.h:33
Definition: BandTriangularSolver.h:13
Pseudo expression providing matrix output with given format.
Definition: IO.h:94
Stores a set of parameters controlling the way matrices are printed.
Definition: IO.h:50
const WithFormat< Derived > format(const IOFormat &fmt) const
Definition: IO.h:121