Crombie Tools
sushi.sh
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1 #! /bin/bash
2 
3 # Kills all 'crombie squid jobs',
4 # cleans up current output directory, and
5 # removes unfinished files from submission queue
6 
7 if [ ! -f CrombieSlimmingConfig.sh ]
8 then
9 
10  echo "CrombieSlimmingConfig.sh does not exist. Don't run from this directory"
11  exit 1
12 
13 fi
14 
15 # Stop jobs
16 condor_rm $USER
17 
18 # Remove new jobs from submission queue
19 echo "DELETE FROM queue WHERE status != 'finished';" | mysql --defaults-file=$HOME/my.cnf --defaults-group-suffix=-submit -Dsubmit_queue
20 
21 # Remove the placeholder files generated by condor
22 source CrombieSlimmingConfig.sh
23 
24 if [ -d "$CrombieOutDir" ]
25 then
26 
27  echo "Removing $CrombieOutDir in 3 seconds"
28  sleep 3
29  rm -r "$CrombieOutDir"
30  echo "Done"
31 
32 fi