|
| def | hounsfieldToUnit (h) |
| |
| def | checkNan (obj) |
| |
| def | rescaleArray (arr, minv=0.0, maxv=1.0, dtype=np.float32) |
| |
| def | rescaleArrayIntMax (arr, dtype=np.uint16) |
| |
| def | processImageNp (imgobj, writeBack=False, dtype=np.float32) |
| |
| def | transposeRowsColsNP (img) |
| |
| def | reverseAxes (img) |
| |
| def | sampleImageRay (img, start, samplevec, numsamples) |
| |
| def | loadImageFile (filename, imgobj, pos=vec3(), rot=rotator(), spacing=(1.0, 1.0)) |
| |
| def | loadImageStack (files, imgLoadFunc, positions, rot=rotator(), spacing=(1.0, 1.0), task=None) |
| |
| def | generateImageStack (width, height, slices, timesteps=1, pos=vec3(), rot=rotator(), spacing=vec3(1), name='img') |
| |
| def | generateTestImageStack (width, height, slices, timesteps=1, pos=vec3(), rot=rotator(), spacing=vec3(1)) |
| |
| def | generateSphereImageStack (width, height, slices, center=vec3(0.5), scale=vec3(0.45), innerval=0.75, shellval=1.0) |
| |
| def | calculateImageStackHistogramRange (process, imgs, minv, maxv) |
| |
| def | calculateImageStackHistogram (imgs, minv=None, maxv=None, task=None) |
| |
| def | getHistogramExtremas (hist, thresholdFilter=True, thresholdfunc=None, sigma=3, order=5) |
| |
| def | isCTImageSeries (imgs=None, minv=None, maxv=None, hist=None) |
| |
| def | applySlopeIntercept (imgobj, slope=None, inter=None) |
| |
| def | getLargestMaskObject (mask) |
| |
| def | calculateMotionField (obj) |
| |
| def | calculateMotionFFT (imgmat) |
| |
| def | generateMotionMask (motion, percentile=90, filterSize=10) |
| |
| def | generateMaskConvexHull (mask) |
| |
| def | cropCenter (img, cropDims) |
| |
| def | cropVolumeMask (imgobj, mask, threshold, task=None) |
| |
| def | cropObjectEmptySpace (obj, name, xymargins=0, zFilter=False) |
| |
| def | cropRefImage (obj, ref, name, marginx=0, marginy=0) |
| |
| def | cropMotionImage (obj, name, percentile=90, filterSize=10) |
| |
| def | maskMotionImage (obj, firstStepOnly=True, percentile=90, filterSize=10) |
| |
| def | centerImagesLocalSpace (obj) |
| |
| def | normalizeImageData (obj) |
| |
| def | binaryMaskImageRange (process, imgs, threshold) |
| |
| def | binaryMaskImage (obj, threshold, task=None) |
| |
| def | thresholdImageRange (process, imgs, minv, maxv) |
| |
| def | thresholdImage (obj, minv, maxv, task=None) |
| |
| def | sampleImageVolume (obj, pt, timestep, transinv=None) |
| |
| def | calculateReprIsoplaneMesh (rep, planetrans, stackpos, slicewidth) |
| |
| def | resampleImage (srcobj, destobj) |
| |
| def | deformImage2D (img, defx, defy) |
| |
| def | shiftImageXY (img, shifts) |
| |
| def | mergeColinearImagesRange (process, imglist, mergefunc) |
| |
| def | mergeColinearImages (imgobjs, objout, mergefunc=None, task=None) |
| |
| def | mergeImages (imgobjs, imgout, mergefunc=None, task=None) |
| |
| def | dilateImageVolume (obj, size=(5, 5, 5)) |
| |
| def | extendImageRange (process, imglist, mx, my, fillVal) |
| |
| def | extendImage (obj, name, mx, my, mz, fillVal=0, numProcs=0, task=None) |
| |
| def | createTemporalImage (obj, numImgsPerStep=None, stepMul=1) |
| |
