| __init__(self) | CTMotionTrackPlugin | |
| eidolon::ScenePlugin::ImageScenePlugin.__init__(self, name) | ImageScenePlugin | |
| _newProjDialog(self) | CTMotionTrackPlugin | private |
| acceptFile(self, filename) | ScenePlugin | |
| addObject(self, obj) | CTMotionTrackPlugin | |
| addSceneObject(self, obj) | ScenePlugin | |
| addSceneObjectRepr(self, rep) | ScenePlugin | |
| alignIntersectImages(self, volume, intersects, tempDir=None, numIters=1, dilation=5, moveScale=0.1, task=None) | IRTKPluginMixin | |
| alignShortStack(self, saxname, segname, templatename=None) | IRTKPluginMixin | |
| applyImageDof(self, inname, outname, doffile, cwd, correctNifti=True) | IRTKPluginMixin | |
| applyMaterial(self, rep, mat, kwargs) | ImageScenePlugin | |
| applyMotionTrack(self, obj_or_name, trackname_or_dir, addObject=True) | IRTKPluginMixin | |
| applyMotionTrackPoints(self, dirname, pts) | IRTKPluginMixin | |
| CHeart | IRTKPluginMixin | |
| checkFileOverwrite(self, obj, dirpath, name=None) | ScenePlugin | |
| checkMotionTrackJobs(self, jids) | IRTKPluginMixin | |
| cleanup(self) | ScenePlugin | |
| clone(self, obj, name) | ImageScenePlugin | |
| composedofs | IRTKPluginMixin | |
| convertdof | IRTKPluginMixin | |
| copyObjFiles(self, obj, sdir, overwrite=False) | ScenePlugin | |
| correctNiftiParams(self, sourceobj, destfile, makeProspective=False) | IRTKPluginMixin | |
| createHandles(self, rep, kwargs) | ScenePlugin | |
| createImageGrid(self, obj, w, h, d) | IRTKPluginMixin | |
| createImageStackObject(self, name, width, height, slices, timesteps=1, pos=vec3(), rot=rotator(), spacing=vec3(1)) | ImageScenePlugin | |
| createIntersectObject(self, name, objs, timesteps=1, spacing=vec3(1)) | ImageScenePlugin | |
| createIsotropicObject(self, obj, cropEmpty, spacing=1.0, task=None) | IRTKPluginMixin | |
| createObjectFromArray(self, name, array, interval=1.0, toffset=0, pos=vec3(), rot=rotator(), spacing=vec3(1), task=None) | ImageScenePlugin | |
| createObjPropBox(self, obj) | ImageScenePlugin | |
| createProject(self, name, parentdir) | CTMotionTrackPlugin | |
| createRepr(self, obj, reprtype, kwargs) | ImageScenePlugin | |
| createReprPropBox(self, rep) | ImageScenePlugin | |
| createRespacedObject(self, obj, name, spacing=vec3(1)) | ImageScenePlugin | |
| createSceneObject(self, name, images, source=None, isTimeDependent=None) | ImageScenePlugin | |
| createSegObject(self, srcname, segtype) | IRTKPluginMixin | |
| createSequence(self, name, objs, timesteps=None) | ImageScenePlugin | |
| createTestImage(self, w, h, d, timesteps=1, pos=vec3(), rot=rotator(), spacing=vec3(1)) | ImageScenePlugin | |
| createTimeRegStack(self, template, stack, trname=None, loadObject=True) | IRTKPluginMixin | |
| cropMotionObject(self, srcname, threshold, filtersize, task) | IRTKPluginMixin | |
| cropXY(self, obj, name, minx, miny, maxx, maxy) | ImageScenePlugin | |
| decimatesurf | IRTKPluginMixin | |
| Dicom | IRTKPluginMixin | |
| editimage | IRTKPluginMixin | |
| emptyCropObject(self, imgobj, loadObj=True) | IRTKPluginMixin | |
| exesuffix | IRTKPluginMixin | |
| extendImageObject(self, obj, mx=0, my=0, mz=0, value=0, task=None) | IRTKPluginMixin | |
| extendImageStack(self, stack, mx=0, my=0, mz=0, value=0) | IRTKPluginMixin | |
| extractTimesteps(self, obj, name, indices=None, timesteps=None, setTimestep=False) | ImageScenePlugin | |
| extractTimestepsToObject(self, srcname, indices=None, timesteps=None) | IRTKPluginMixin | |
| ffd_motion | IRTKPluginMixin | |
| findObject(self, name, assertFound=True) | ScenePlugin | |
| fixshort | IRTKPluginMixin | |
| getCWD(self) | CTMotionTrackPlugin | |
| getHelp(self) | ScenePlugin | |
| getIcon(self, obj) | ImageScenePlugin | |
| getImageObjectArray(self, obj, datatype=float) | ImageScenePlugin | |
| getLocalFile(self, name) | CTMotionTrackPlugin | |
| getLogFile(self, filename) | CTMotionTrackPlugin | |
| getMenu(self, obj) | ImageScenePlugin | |
| getNiftiFile(self, name) | IRTKPluginMixin | |
| getObjFiles(self, obj) | ImageScenePlugin | |
| getReprParamHelp(self, obj, reprtype) | ScenePlugin | |
| getReprParams(self, obj, reprtype) | ImageScenePlugin | |
| getReprTypes(self, obj) | ImageScenePlugin | |
| getScriptCode(self, obj, kwargs) | ScenePlugin | |
| getServerAddrPort(self) | IRTKPluginMixin | |
| getTrackingDirs(self, root=None) | IRTKPluginMixin | |
| getUniqueLocalFile(self, name) | IRTKPluginMixin | |
| getUniqueObjName(self, name) | IRTKPluginMixin | |
| getUniqueShortName(self, comps, kwargs) | IRTKPluginMixin | |
| gpu_nreg | IRTKPluginMixin | |
| gpu_nreg_default | IRTKPluginMixin | |
| info | IRTKPluginMixin | |
| init(self, plugid, win, mgr) | CTMotionTrackPlugin | |
| interpolateImageObject(self, obj, numAddedSlices, tempDir=None, task=None) | IRTKPluginMixin | |
| interpolateImages2D(self, im0, im1, numImgs, tempDir=None) | IRTKPluginMixin | |
| invertTimesteps(self, sourceobj) | IRTKPluginMixin | |
| irtkdir | IRTKPluginMixin | |
| irtkpath | IRTKPluginMixin | |
| isServerAlive(self, serveraddr=None, serverport=None) | IRTKPluginMixin | |
| load3DTagSeries(self, tagobj, makeProspective, loadPlanes=False, makeDetag=True, spacing=vec3(1), tryFix=True) | IRTKPluginMixin | |
| loadNiftiFiles(self, filenames, task=None) | CTMotionTrackPlugin | |
| loadObject(self, filename, name=None, kwargs) | ScenePlugin | |
| Meta | IRTKPluginMixin | |
| mgr | ScenePlugin | |
| mirtkdir | IRTKPluginMixin | |
| motiontrack | IRTKPluginMixin | |
| name | ScenePlugin | |
| Nifti | IRTKPluginMixin | |
| nreg_default | IRTKPluginMixin | |
| objectMenuItem(self, obj, item) | ImageScenePlugin | |
| offsetTimesteps(self, sourceobj, suffix, value, makeProspective=False) | IRTKPluginMixin | |
| patient1e4 | IRTKPluginMixin | |
| patient1e6 | IRTKPluginMixin | |
| Plot | IRTKPluginMixin | |
| plugid | ScenePlugin | |
| project | CTMotionTrackPlugin | |
| readPolyNodes(self, filename) | IRTKPluginMixin | |
| refImageCrop(self, imgname, refname, mx, my) | IRTKPluginMixin | |
| register | IRTKPluginMixin | |
| registerImage2D(self, src, tgt, tempDir=None, spacing=10, model='BSplineFFD') | IRTKPluginMixin | |
| removeFilesTask(self, fileglob) | ScenePlugin | |
| removeObject(self, obj) | ScenePlugin | |
| renameObjFiles(self, obj, oldname, overwrite=False) | ScenePlugin | |
| reorderMulticycleImage(self, srcname, starttime, timestep, task) | IRTKPluginMixin | |
| resampleObject(self, srcname, templatename, isIsotropic) | IRTKPluginMixin | |
| rigidRegisterStack(self, subjectname, rtargetname, htargetname, finalname, doffile, paramfile, correctNifti) | IRTKPluginMixin | |
| rigidRegisterStackList(self, subjectname, intermedname, targetnames) | IRTKPluginMixin | |
| rreg | IRTKPluginMixin | |
| saveObject(self, obj, path, overwrite=False, setFilenames=False, kwargs) | ScenePlugin | |
| saveToNifti(self, objs, setObjArgs=False) | IRTKPluginMixin | |
| Segment | CTMotionTrackPlugin | |
| sendServerMsg(self, msg, args=(), buffsize=4096, timeout=10.0, serveraddr=None, serverport=None) | IRTKPluginMixin | |
| serverdir | IRTKPluginMixin | |
| setCTImageRange(self, obj, isCT) | ImageScenePlugin | |
| setObjectTimestep(self, objname, start, step, task=None) | IRTKPluginMixin | |
| setServerAddrPort(self, addr, port) | IRTKPluginMixin | |
| Slice | IRTKPluginMixin | |
| spatialcorrect | IRTKPluginMixin | |
| spatialCorrect(self, target, before, after, prefix, extras=[], xyOnly=True, trans=True, logfile=None, cwd=None) | IRTKPluginMixin | |
| startGPUNRegMotionTrack(self, imgname, maskname, trackname, paramfile) | IRTKPluginMixin | |
| startMotionTrackJob(self, trackname, maskname, dirname, adaptive, chosenparam) | IRTKPluginMixin | |
| startMotionTrackServer(self, addr=None, port=None) | IRTKPluginMixin | |
| startRegisterMotionTrack(self, imgname, maskname, trackname, paramfile, model=None, onefile=False, task=None) | IRTKPluginMixin | |
| transimage | IRTKPluginMixin | |
| transpts | IRTKPluginMixin | |
| updateObjPropBox(self, obj, prop) | ImageScenePlugin | |
| updateReprPropBox(self, rep, prop) | ImageScenePlugin | |
| VTK | IRTKPluginMixin | |
| win | ScenePlugin | |
| writePolyNodes(self, filename, nodes) | IRTKPluginMixin | |
