faunus
Faunus::CoarseGrainedFastaFileReader Member List

This is the complete list of members for Faunus::CoarseGrainedFastaFileReader, including all inherited members.

box_dimension_support (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
box_length (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
CoarseGrainedFastaFileReader(double bond_length, const Point &initial_particle_position=Point(0, 0, 0)) (defined in Faunus::CoarseGrainedFastaFileReader)Faunus::CoarseGrainedFastaFileReaderexplicit
comments (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
expected_number_of_particles (defined in Faunus::StructureFileReader)Faunus::StructureFileReaderprotected
getFastaLetter(std::istream &stream) (defined in Faunus::CoarseGrainedFastaFileReader)Faunus::CoarseGrainedFastaFileReaderstatic
getNextLine(std::istream &stream, std::string &destination, const std::string &comment_identifiers)Faunus::StructureFileReaderprotected
getNumberOfAtoms(const std::string &line)Faunus::StructureFileReaderprotectedstatic
handleChargeMismatch(Particle &particle, int atom_index) constFaunus::StructureFileReaderprotected
handleRadiusMismatch(const Particle &particle, double radius, int atom_index)Faunus::StructureFileReaderprotectedstatic
load(std::istream &stream)Faunus::StructureFileReader
load(std::string_view filename) (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
loadSequence(std::istream &stream) (defined in Faunus::CoarseGrainedFastaFileReader)Faunus::CoarseGrainedFastaFileReader
particle_charge_support (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
particle_radius_support (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
particles (defined in Faunus::StructureFileReader)Faunus::StructureFileReader
prefer_charges_from_fileFaunus::StructureFileReader
setBondLength(double bond_length) (defined in Faunus::CoarseGrainedFastaFileReader)Faunus::CoarseGrainedFastaFileReader
~StructureFileReader()=default (defined in Faunus::StructureFileReader)Faunus::StructureFileReadervirtual