compbio
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Base class of SVD algorithms. More...
#include <SVDBase.h>
Public Types | |
enum | { RowsAtCompileTime = MatrixType::RowsAtCompileTime, ColsAtCompileTime = MatrixType::ColsAtCompileTime, DiagSizeAtCompileTime = EIGEN_SIZE_MIN_PREFER_DYNAMIC(RowsAtCompileTime,ColsAtCompileTime), MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime, MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime, MaxDiagSizeAtCompileTime = EIGEN_SIZE_MIN_PREFER_FIXED(MaxRowsAtCompileTime,MaxColsAtCompileTime), MatrixOptions = MatrixType::Options } |
typedef internal::traits< Derived >::MatrixType | MatrixType |
typedef MatrixType::Scalar | Scalar |
typedef NumTraits< typename MatrixType::Scalar >::Real | RealScalar |
typedef MatrixType::StorageIndex | StorageIndex |
typedef Eigen::Index | Index |
typedef Matrix< Scalar, RowsAtCompileTime, RowsAtCompileTime, MatrixOptions, MaxRowsAtCompileTime, MaxRowsAtCompileTime > | MatrixUType |
typedef Matrix< Scalar, ColsAtCompileTime, ColsAtCompileTime, MatrixOptions, MaxColsAtCompileTime, MaxColsAtCompileTime > | MatrixVType |
typedef internal::plain_diag_type< MatrixType, RealScalar >::type | SingularValuesType |
Public Member Functions | |
Derived & | derived () |
const Derived & | derived () const |
const MatrixUType & | matrixU () const |
const MatrixVType & | matrixV () const |
const SingularValuesType & | singularValues () const |
Index | nonzeroSingularValues () const |
Index | rank () const |
Derived & | setThreshold (const RealScalar &threshold) |
Allows to prescribe a threshold to be used by certain methods, such as rank() and solve(), which need to determine when singular values are to be considered nonzero. More... | |
Derived & | setThreshold (Default_t) |
Allows to come back to the default behavior, letting Eigen use its default formula for determining the threshold. More... | |
RealScalar | threshold () const |
Returns the threshold that will be used by certain methods such as rank(). More... | |
bool | computeU () const |
bool | computeV () const |
Index | rows () const |
Index | cols () const |
template<typename Rhs > | |
const Solve< Derived, Rhs > | solve (const MatrixBase< Rhs > &b) const |
template<typename RhsType , typename DstType > | |
EIGEN_DEVICE_FUNC void | _solve_impl (const RhsType &rhs, DstType &dst) const |
template<typename RhsType , typename DstType > | |
void | _solve_impl (const RhsType &rhs, DstType &dst) const |
Protected Member Functions | |
bool | allocate (Index rows, Index cols, unsigned int computationOptions) |
SVDBase () | |
Default Constructor. More... | |
Static Protected Member Functions | |
static void | check_template_parameters () |
Protected Attributes | |
MatrixUType | m_matrixU |
MatrixVType | m_matrixV |
SingularValuesType | m_singularValues |
bool | m_isInitialized |
bool | m_isAllocated |
bool | m_usePrescribedThreshold |
bool | m_computeFullU |
bool | m_computeThinU |
bool | m_computeFullV |
bool | m_computeThinV |
unsigned int | m_computationOptions |
Index | m_nonzeroSingularValues |
Index | m_rows |
Index | m_cols |
Index | m_diagSize |
RealScalar | m_prescribedThreshold |
Base class of SVD algorithms.
Derived | the type of the actual SVD decomposition |
SVD decomposition consists in decomposing any n-by-p matrix A as a product
\[ A = U S V^* \]
where U is a n-by-n unitary, V is a p-by-p unitary, and S is a n-by-p real positive matrix which is zero outside of its main diagonal; the diagonal entries of S are known as the singular values of A and the columns of U and V are known as the left and right singular vectors of A respectively.
Singular values are always sorted in decreasing order.
You can ask for only thin U or V to be computed, meaning the following. In case of a rectangular n-by-p matrix, letting m be the smaller value among n and p, there are only m singular vectors; the remaining columns of U and V do not correspond to actual singular vectors. Asking for thin U or V means asking for only their m first columns to be formed. So U is then a n-by-m matrix, and V is then a p-by-m matrix. Notice that thin U and V are all you need for (least squares) solving.
If the input matrix has inf or nan coefficients, the result of the computation is undefined, but the computation is guaranteed to terminate in finite (and reasonable) time.
typedef Eigen::Index Eigen::SVDBase< Derived >::Index |
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Default Constructor.
Default constructor of SVDBase
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For the SVD decomposition of a n-by-p matrix, letting m be the minimum of n and p, the U matrix is n-by-n if you asked for ComputeFullU , and is n-by-m if you asked for ComputeThinU .
The m first columns of U are the left singular vectors of the matrix being decomposed.
This method asserts that you asked for U to be computed.
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For the SVD decomposition of a n-by-p matrix, letting m be the minimum of n and p, the V matrix is p-by-p if you asked for ComputeFullV , and is p-by-m if you asked for ComputeThinV .
The m first columns of V are the right singular vectors of the matrix being decomposed.
This method asserts that you asked for V to be computed.
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*this
is the SVD.
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Allows to prescribe a threshold to be used by certain methods, such as rank() and solve(), which need to determine when singular values are to be considered nonzero.
This is not used for the SVD decomposition itself.
When it needs to get the threshold value, Eigen calls threshold(). The default is NumTraits<Scalar>::epsilon()
threshold | The new value to use as the threshold. |
A singular value will be considered nonzero if its value is strictly greater than \( \vert singular value \vert \leqslant threshold \times \vert max singular value \vert \).
If you want to come back to the default behavior, call setThreshold(Default_t)
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Allows to come back to the default behavior, letting Eigen use its default formula for determining the threshold.
You should pass the special object Eigen::Default as parameter here.
See the documentation of setThreshold(const RealScalar&).
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For the SVD decomposition of a n-by-p matrix, letting m be the minimum of n and p, the returned vector has size m. Singular values are always sorted in decreasing order.
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b | the right-hand-side of the equation to solve. |
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Returns the threshold that will be used by certain methods such as rank().
See the documentation of setThreshold(const RealScalar&).