CardiacMotionProject Class Reference

Inheritance diagram for CardiacMotionProject:

Collaboration diagram for CardiacMotionProject:

Public Member Functions
def	__init__ (self, name, parentdir, mgr)
def	create (self)
def	getPropBox (self)
def	updatePropBox (self, proj, prop)
def	updateConfigFromProp (self, args)
def	renameObject (self, obj, oldname)
def	getReportCard (self)
def	checkIncludeObject (self, obj, task)
Public Member Functions inherited from Project
def	__init__ (self, name, parentdir, mgr)
def	addHandlers (self)
def	create (self)
def	remove (self)
def	getLabel (self)
def	getProjectDir (self)
def	getProjectFile (self, filename)
def	getScriptPath (self)
def	getConfigPath (self)
def	getVarName (self, obj)
def	getProjectObj (self, name)
def	hasFile (self, path)
def	getUniqueObjName (self, name)
def	addObject (self, obj)
def	removeObject (self, obj)
def	hasObject (self, obj)
def	renameObject (self, obj, oldname)
def	checkIncludeObject (self, obj)
def	save (self)
def	loadConfig (self, filename=None)
def	saveConfig (self)
def	getPropBox (self)
def	updatePropBox (self, proj, prop)

Public Attributes
	Measure
	CardiacMotion
	ReportCard
	header
	alignprop
	numUnknownJobs
	reportcard
	logDir
	backDir
Public Attributes inherited from Project
	name
	parentdir
	mgr
	memberObjs
	configMap
	varcounter
	checkboxMap
	prop
	header
	backDir

Private Member Functions
def	_readDicomHeartRate (self, series)
def	_checkTrackDirs (self)
def	_loadNiftiFile (self)
def	_loadMetaFile (self)
def	_alignButton (self)
def	_createSegButton (self)
def	_rigidRegButton (self)
def	_motionCropSeries (self)
def	_cropBoundBox (self)
def	_cropEmpty (self)
def	_loadCineSeries (self)
def	_loadMorphoSeries (self)
def	_load3DTagSeries (self)
def	_loadMagFlow (self)
def	_loadVTKFile (self)
def	_loadCHeartFiles (self)
def	_setTimestep (self)
def	_invertOrder (self)
def	_offsetTimestep (self)
def	_prospTimestep (self)
def	_reorderMulticycle (self)
def	_chooseParamFile (self)
def	_chooseNRegParamFile (self)
def	_startMotionJob (self)
def	_checkMotionJob (self, checkActive=True)
def	_startNregMotion (self)
def	_killJob (self)
def	_applyTrackButton (self)
def	_resampleImage (self)
def	_extendImage (self)
def	_extractTimesteps (self)
def	_createGridButton (self)
def	_createIsoImage (self)
def	_calculateThicknessButton (self)
def	_calculateAvgDispButton (self)
def	_calculateVolumeButton (self)
def	_calculateImageMaskVolumeButton (self)
def	_calculateStrainButton (self)
def	_calculateStrainMeshButton (self)
def	_calculateTorsionButton (self)
def	_calculateSqueezeButton (self)
def	_calculateKineticEnergyButton (self)
def	_tagCheckBox (self, isChecked)

Constructor & Destructor Documentation

__init__()

def __init__	(		self,
			name,
			parentdir,
			mgr
	)

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Member Function Documentation

_alignButton()

def _alignButton (   self )

private

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_applyTrackButton()

def _applyTrackButton (   self )

private

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_calculateAvgDispButton()

def _calculateAvgDispButton (   self )

private

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_calculateImageMaskVolumeButton()

def _calculateImageMaskVolumeButton (   self )

private

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_calculateKineticEnergyButton()

def _calculateKineticEnergyButton (   self )

private

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_calculateSqueezeButton()

def _calculateSqueezeButton (   self )

private

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_calculateStrainButton()

def _calculateStrainButton (   self )

private

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_calculateStrainMeshButton()

def _calculateStrainMeshButton (   self )

private

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_calculateThicknessButton()

def _calculateThicknessButton (   self )

private

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_calculateTorsionButton()

def _calculateTorsionButton (   self )

private

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_calculateVolumeButton()

def _calculateVolumeButton (   self )

private

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_checkMotionJob()

def _checkMotionJob (   self,   checkActive = True  )

private

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_checkTrackDirs()

def _checkTrackDirs (   self )

private

Check tracking directories for a file named `trackconfname', this should appear in tracking directories made
later and will contain more information than the original job.ini files. If the file is missing, create it
based on the source image chosen by the user if there is a choice, guess otherwise.

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_chooseNRegParamFile()

def _chooseNRegParamFile (   self )

private

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_chooseParamFile()

def _chooseParamFile (   self )

private

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_createGridButton()

def _createGridButton (   self )

private

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_createIsoImage()

def _createIsoImage (   self )

private

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_createSegButton()

def _createSegButton (   self )

private

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_cropBoundBox()

def _cropBoundBox (   self )

private

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_cropEmpty()

def _cropEmpty (   self )

private

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_extendImage()

def _extendImage (   self )

private

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_extractTimesteps()

def _extractTimesteps (   self )

private

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_invertOrder()

def _invertOrder (   self )

private

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_killJob()

def _killJob (   self )

private

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_load3DTagSeries()

def _load3DTagSeries (   self )

private

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_loadCHeartFiles()

def _loadCHeartFiles (   self )

private

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_loadCineSeries()

def _loadCineSeries (   self )

private

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_loadMagFlow()

def _loadMagFlow (   self )

private

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_loadMetaFile()

def _loadMetaFile (   self )

private

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_loadMorphoSeries()

def _loadMorphoSeries (   self )

private

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_loadNiftiFile()

def _loadNiftiFile (   self )

private

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_loadVTKFile()

def _loadVTKFile (   self )

private

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_motionCropSeries()

def _motionCropSeries (   self )

private

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_offsetTimestep()

def _offsetTimestep (   self )

private

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_prospTimestep()

def _prospTimestep (   self )

private

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_readDicomHeartRate()

def _readDicomHeartRate (   self,   series  )

private

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_reorderMulticycle()

def _reorderMulticycle (   self )

private

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_resampleImage()

def _resampleImage (   self )

private

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_rigidRegButton()

def _rigidRegButton (   self )

private

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_setTimestep()

def _setTimestep (   self )

private

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_startMotionJob()

def _startMotionJob (   self )

private

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_startNregMotion()

def _startNregMotion (   self )

private

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_tagCheckBox()

def _tagCheckBox (   self,   isChecked  )

private

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checkIncludeObject()

def checkIncludeObject	(		self,
			obj,
			task
	)

Check whether the given object should be added to the project or not.

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create()

def create

(

self

)

Task routine set to run after the project is loaded which does extra setup or config operations.

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getPropBox()

def getPropBox

(

self

)

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getReportCard()

def getReportCard

(

self

)

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renameObject()

def renameObject	(		self,
			obj,
			oldname
	)

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updateConfigFromProp()

def updateConfigFromProp	(		self,
			args
	)

Read data into self.configMap from the UI.

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updatePropBox()

def updatePropBox	(		self,
			proj,
			prop
	)

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Member Data Documentation

alignprop

alignprop

backDir

backDir

CardiacMotion

CardiacMotion

header

header

logDir

logDir

Measure

Measure

numUnknownJobs

numUnknownJobs

ReportCard

ReportCard

reportcard

reportcard

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The documentation for this class was generated from the following file:

• eidolon/plugins/CardiacMotionPlugin.py