Inheritance diagram for SegmentPlugin:

Collaboration diagram for SegmentPlugin:

Public Member Functions
def	__init__ (self)

def	init (self, plugid, win, mgr)

def	getIcon (self, obj)

def	getMenu (self, obj)

def	getSegFilename (self, isOpen=True)

def	getSegObjectWidget (self, obj)

def	objectMenuItem (self, obj, item)

def	createObjPropBox (self, obj)

def	updateObjPropBox (self, obj, prop)

def	acceptFile (self, filename)

def	checkFileOverwrite (self, obj, dirpath, name=None)

def	renameObjFiles (self, obj, oldname, overwrite=False)

def	getObjFiles (self, obj)

def	copyObjFiles (self, obj, sdir, overwrite=False)

def	getScriptCode (self, obj, kwargs)

def	createSegmentObject (self, filename, name, stype)

def	createRepr (self, obj, reprtype, refine=0, kwargs)

def	getSegObjectDock (self, obj, w=400, h=400)

def	loadSegObject (self, filename, name=None)

def	loadObject (self, filename, name=None, kwargs)

def	saveObject (self, obj, path, overwrite=False, setFilenames=False, kwargs)

def	createHemisphereMesh (self, segobj, name, refine, reinterpolateVal=20, calcAHA=False, isVolume=False, inner=True, plugin=None)

def	createImageMask (self, segobj, name, template, labelfunc='1', refine=1, elemtype=None, task=None)

def	cropImageBySegment (self, obj, segobj, margin, task=None)

def	createSegObjectFromMask (self, name, stype, mask, numctrls, innerseg, minSegSize=100, maskindex=0, task=None)

Public Member Functions inherited from ScenePlugin
def	__init__ (self, name)

def	init (self, plugid, win, mgr)

def	cleanup (self)

def	findObject (self, name, assertFound=True)

def	removeFilesTask (self, fileglob)

def	getScriptCode (self, obj, kwargs)

def	getIcon (self, obj)

def	getMenu (self, obj)

def	getHelp (self)

def	acceptFile (self, filename)

def	loadObject (self, filename, name=None, kwargs)

def	saveObject (self, obj, path, overwrite=False, setFilenames=False, kwargs)

def	checkFileOverwrite (self, obj, dirpath, name=None)

def	getObjFiles (self, obj)

def	renameObjFiles (self, obj, oldname, overwrite=False)

def	copyObjFiles (self, obj, sdir, overwrite=False)

def	removeObject (self, obj)

def	createRepr (self, obj, reprtype, kwargs)

def	getReprParams (self, obj, reprtype)

def	getReprParamHelp (self, obj, reprtype)

def	getReprTypes (self, obj)

def	createHandles (self, rep, kwargs)

def	updateObjPropBox (self, obj, prop)

def	updateReprPropBox (self, rep, prop)

def	createObjPropBox (self, obj)

def	createReprPropBox (self, rep)

def	addSceneObject (self, obj)

def	addSceneObjectRepr (self, rep)

def	applyMaterial (self, rep, mat, kwargs)

def	objectMenuItem (self, obj, item)

Public Attributes
	objcount

	SegmentTypes

	dockmap

Public Attributes inherited from ScenePlugin
	plugid

	win

	mgr

	name

Private Member Functions
def	_importSeg (self)

def	_createSeg (self)

def	_createContoursButton (self, prop, obj)

def	_generateMeshButton (self, prop, obj)

def	_generateMaskButton (self, prop, obj)

def	_cropImageButton (self, prop, obj)

Constructor & Destructor Documentation

◆ init()

def __init__ ( self )

Member Function Documentation

◆ _createContoursButton()

def _createContoursButton	(	self,
		prop,
		obj
	)

private

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◆ _createSeg()

def _createSeg ( self )

private

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◆ _cropImageButton()

def _cropImageButton	(	self,
		prop,
		obj
	)

private

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◆ _generateMaskButton()

def _generateMaskButton	(	self,
		prop,
		obj
	)

private

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◆ _generateMeshButton()

def _generateMeshButton	(	self,
		prop,
		obj
	)

private

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◆ _importSeg()

def _importSeg ( self )

private

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◆ acceptFile()

def acceptFile	(	self,
		filename
	)

◆ checkFileOverwrite()

def checkFileOverwrite	(	self,
		obj,
		dirpath,
		name = `None`
	)

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◆ copyObjFiles()

def copyObjFiles	(	self,
		obj,
		sdir,
		overwrite = `False`
	)

◆ createHemisphereMesh()

def createHemisphereMesh	(	self,
		segobj,
		name,
		refine,
		reinterpolateVal = `20`,
		calcAHA = `False`,
		isVolume = `False`,
		inner = `True`,
		plugin = `None`
	)

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◆ createImageMask()

def createImageMask	(	self,
		segobj,
		name,
		template,
		labelfunc = `'1'`,
		refine = `1`,
		elemtype = `None`,
		task = `None`
	)

Create a mask image object from `segobj'. See generateImageMask() for description.

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◆ createObjPropBox()

def createObjPropBox	(	self,
		obj
	)

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◆ createRepr()

def createRepr	(	self,
		obj,
		reprtype,
		refine = `0`,
		kwargs
	)

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◆ createSegmentObject()

def createSegmentObject	(	self,
		filename,
		name,
		stype
	)

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◆ createSegObjectFromMask()

def createSegObjectFromMask	(	self,
		name,
		stype,
		mask,
		numctrls,
		innerseg,
		minSegSize = `100`,
		maskindex = `0`,
		task = `None`
	)

Given a mask image `mask', calculate a segmentation with each contour having `numctrls' control points. The
name of the resulting object will be `name' or a modified form thereof acceptable as a filename. The `stype'
parameter is a member of SegmentTypes and specifies what type of segmentation this should be, if it equals LV
then each plane should have 2 contours for an inner and outer surface, otherwise one for the inner surface.

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