Decomposition_Base.cpp

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/*
Created on Fri Jun 26 14:13:26 2020
Copyright 2020 Peter Rakyta, Ph.D.

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

    http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

@author: Peter Rakyta, Ph.D.
*/
#include "Decomposition_Base.h"
#include "Sub_Matrix_Decomposition_Cost_Function.h"
#include <limits>

// default layer numbers
std::map<int,int> Decomposition_Base::max_layer_num_def;

namespace {

std::mt19937 make_decomposition_generator(
    std::map<std::string, Config_Element>* config = nullptr) {

    if (config != nullptr && config->count("random_seed") > 0) {
        long long seed;
        (*config)["random_seed"].get_property(seed);
        return std::mt19937(static_cast<std::mt19937::result_type>(seed));
    }

    return std::mt19937(std::random_device{}());
}

}


Decomposition_Base::Decomposition_Base() {

     
    // A string labeling the gate operation
    name = "Decomposition_Interface";

    Init_max_layer_num();

    
    // logical value describing whether the decomposition was finalized or not
    decomposition_finalized = false;

    // A string describing the type of the class
    type = DECOMPOSITION_BASE_CLASS;

    // error of the unitarity of the final decomposition
    decomposition_error = DBL_MAX;

    // number of finalizing (deterministic) opertaions counted from the top of the array of gates
    finalizing_gates_num = 0;

    // the number of the finalizing (deterministic) parameters counted from the top of the optimized_parameters list
    finalizing_parameter_num = 0;

    // The current minimum of the optimization problem
    current_minimum = std::numeric_limits<double>::max();

    // The global minimum of the optimization problem
    global_target_minimum = 0;

    // logical value describing whether the optimization problem was solved or not
    optimization_problem_solved = false;

    // number of iteratrion loops in the finale optimization
    //iteration_loops = dict()

    // The maximal allowed error of the optimization problem
    optimization_tolerance = 1e-7;

    // Maximal number of iteartions in the optimization process
    max_outer_iterations = 1e8;

    // number of operators in one sub-layer of the optimization process
    optimization_block = -1;

    // method to guess initial values for the optimization. Possible values: ZEROS, RANDOM, CLOSE_TO_ZERO (default)
    initial_guess = ZEROS;

    // The convergence threshold in the optimization process
    convergence_threshold = 1e-5;

    use_float = false;
    
    //global phase of the unitary matrix
    global_phase_factor.real = 1;
    global_phase_factor.imag = 0;
    
    //the name of the SQUANDER project
    std::string projectname = "";


    gen = make_decomposition_generator();

#if CBLAS==1
    num_threads = mkl_get_max_threads();
#elif CBLAS==2
    num_threads = openblas_get_num_threads();
#endif



}


Decomposition_Base::Decomposition_Base( Matrix Umtx_in, int qbit_num_in, std::map<std::string, Config_Element>& config_in, guess_type initial_guess_in= CLOSE_TO_ZERO ) : Gates_block(qbit_num_in) {

    // A string labeling the gate operation
    name = "Decomposition_Interface";

    Init_max_layer_num();

   
    // the unitary operator to be decomposed
    Umtx = Umtx_in;
   
    // logical value describing whether the decomposition was finalized or not
    decomposition_finalized = false;

    // A string describing the type of the class
    type = DECOMPOSITION_BASE_CLASS;

    // error of the unitarity of the final decomposition
    decomposition_error = DBL_MAX;

    // number of finalizing (deterministic) opertaions counted from the top of the array of gates
    finalizing_gates_num = 0;

    // the number of the finalizing (deterministic) parameters counted from the top of the optimized_parameters list
    finalizing_parameter_num = 0;

    // The current minimum of the optimization problem
    current_minimum = std::numeric_limits<double>::max();

    // The global minimum of the optimization problem
    global_target_minimum = 0;

    // logical value describing whether the optimization problem was solved or not
    optimization_problem_solved = false;

    // number of iteratrion loops in the finale optimization
    //iteration_loops = dict()

    // The maximal allowed error of the optimization problem
    optimization_tolerance = 1e-7;

    // Maximal number of iteartions in the optimization process
    max_outer_iterations = 1e8;

    // number of operators in one sub-layer of the optimization process
    optimization_block = -1;

    // method to guess initial values for the optimization. Possible values: ZEROS, RANDOM, CLOSE_TO_ZERO (default)
    initial_guess = initial_guess_in;

    // The convergence threshold in the optimization process
    convergence_threshold = 1e-5;
    
    //global phase of the unitary matrix
    global_phase_factor.real = 1;
    global_phase_factor.imag = 0;
    
    //name of the SQUANDER project
    std::string projectname = "";


    // config maps
    config   = config_in;

    use_float = false;
    if ( config.count("use_float") > 0 ) {
        config["use_float"].get_property( use_float );
    }
    if ( config.count("convergence_threshold") > 0 ) {
        config["convergence_threshold"].get_property( convergence_threshold );
    }

    if ( use_float ) {
        Umtx_float = Umtx.to_float32();
    }

    gen = make_decomposition_generator(&config);

#if CBLAS==1
    num_threads = mkl_get_max_threads();
#elif CBLAS==2
    num_threads = openblas_get_num_threads();
#endif

#ifdef __MPI__
    // Get the number of processes
    MPI_Comm_size(MPI_COMM_WORLD, &world_size);

    // Get the rank of the process
    MPI_Comm_rank(MPI_COMM_WORLD, &current_rank);

#endif

}

Decomposition_Base::Decomposition_Base( Matrix_float Umtx_in, int qbit_num_in, std::map<std::string, Config_Element>& config_in, guess_type initial_guess_in ) : Gates_block(qbit_num_in) {

    // A string labeling the gate operation
    name = "Decomposition_Interface";

    Init_max_layer_num();

    // Keep the single precision input as the active unitary for the hot path.
    Umtx_float = Umtx_in;
    Umtx = Umtx_in.to_float64();

    // logical value describing whether the decomposition was finalized or not
    decomposition_finalized = false;

    // A string describing the type of the class
    type = DECOMPOSITION_BASE_CLASS;

    // error of the unitarity of the final decomposition
    decomposition_error = DBL_MAX;

    // number of finalizing (deterministic) opertaions counted from the top of the array of gates
    finalizing_gates_num = 0;

    // the number of the finalizing (deterministic) parameters counted from the top of the optimized_parameters list
    finalizing_parameter_num = 0;

    // The current minimum of the optimization problem
    current_minimum = std::numeric_limits<double>::max();

    // The global minimum of the optimization problem
    global_target_minimum = 0;

    // logical value describing whether the optimization problem was solved or not
    optimization_problem_solved = false;

    // The maximal allowed error of the optimization problem
    optimization_tolerance = 1e-7;

    // Maximal number of iteartions in the optimization process
    max_outer_iterations = 1e8;

    // number of operators in one sub-layer of the optimization process
    optimization_block = -1;

    // method to guess initial values for the optimization. Possible values: ZEROS, RANDOM, CLOSE_TO_ZERO (default)
    initial_guess = initial_guess_in;

    // The convergence threshold in the optimization process
    convergence_threshold = 1e-5;

    //global phase of the unitary matrix
    global_phase_factor.real = 1;
    global_phase_factor.imag = 0;

    //name of the SQUANDER project
    std::string projectname = "";

    // config maps
    config = config_in;
    use_float = true;
    if ( config.count("convergence_threshold") > 0 ) {
        config["convergence_threshold"].get_property( convergence_threshold );
    }

    gen = make_decomposition_generator(&config);

#if CBLAS==1
    num_threads = mkl_get_max_threads();
#elif CBLAS==2
    num_threads = openblas_get_num_threads();
#endif

#ifdef __MPI__
    // Get the number of processes
    MPI_Comm_size(MPI_COMM_WORLD, &world_size);

    // Get the rank of the process
    MPI_Comm_rank(MPI_COMM_WORLD, &current_rank);

#endif

}

Decomposition_Base::~Decomposition_Base() {
/*
    if (optimized_parameters != NULL ) {
        qgd_free( optimized_parameters );
        optimized_parameters = NULL;
    }
*/
}

void Decomposition_Base::sync_optimized_parameters_float() {

    if ( !use_float ) {
        return;
    }

    optimized_parameters_mtx_float = Matrix_real_float(1, optimized_parameters_mtx.size());
    for (int pidx=0; pidx<optimized_parameters_mtx.size(); pidx++) {
        optimized_parameters_mtx_float[pidx] = static_cast<float>(optimized_parameters_mtx[pidx]);
    }
}


void Decomposition_Base::set_optimization_blocks( int optimization_block_in) {
    optimization_block = optimization_block_in;
}

void Decomposition_Base::set_max_iteration( int max_outer_iterations_in) {
    max_outer_iterations = max_outer_iterations_in;
}




void Decomposition_Base::list_gates( int start_index ) {

        Gates_block::list_gates( optimized_parameters_mtx, start_index );

}





void  Decomposition_Base::solve_optimization_problem( double* solution_guess, int solution_guess_num ) {
     

        if ( gates.size() == 0 ) {
            return;
        }

        // array containing minimums to check convergence of the solution
        const int min_vec_num = 20;
        double minimum_vec[min_vec_num];
        for ( int idx=0; idx<min_vec_num; idx++) {
            minimum_vec[idx] = 0;
        }

        // setting the initial value for the current minimum
        current_minimum = std::numeric_limits<double>::max();

        // store the gates
        std::vector<Gate*> gates_loc = gates;



        // store the number of parameters
        int parameter_num_loc = parameter_num;

        // store the initial unitary to be decomposed
        Matrix Umtx_loc = Umtx;
        Matrix_float Umtx_float_loc;
        if ( use_float ) {
            Umtx_float_loc = Umtx_float.copy();
        }

        // storing the initial computational parameters
        int optimization_block_loc = optimization_block;
        
        if ( optimization_block == -1 ) {
            optimization_block = gates.size();
        }

        // random generator of real numbers   
        std::uniform_real_distribution<> distrib_real(0.0, 2*M_PI);

        // the array storing the optimized parameters
        Matrix_real optimized_parameters(1, parameter_num_loc);

        // preparing solution guess for the iterations
        if ( initial_guess == ZEROS ) {
            for(int idx = 0; idx < parameter_num-solution_guess_num; idx++) {
                optimized_parameters[idx] = 0;
            }
        }
        else if ( initial_guess == RANDOM ) {
            for(int idx = 0; idx < parameter_num-solution_guess_num; idx++) {
                optimized_parameters[idx] = distrib_real(gen);
            }

#ifdef __MPI__        
            MPI_Bcast( (void*)optimized_parameters.get_data(), parameter_num, MPI_DOUBLE, 0, MPI_COMM_WORLD);
#endif


        }
        else if ( initial_guess == CLOSE_TO_ZERO ) {
            for(int idx = 0; idx < parameter_num-solution_guess_num; idx++) {
                optimized_parameters[idx] = distrib_real(gen)/100;
            }

#ifdef __MPI__        
            MPI_Bcast( (void*)optimized_parameters.get_data(), parameter_num, MPI_DOUBLE, 0, MPI_COMM_WORLD);
#endif

        }
        else {
            std::string err("bad value for initial guess");
        }

        if ( solution_guess_num > 0) {
            memcpy(optimized_parameters.get_data() + parameter_num-solution_guess_num, solution_guess, solution_guess_num*sizeof(double));
        }


        // starting number of gate block applied prior to the optimalized gate blocks
        int pre_gate_parameter_num = 0;

        // defining temporary variables for iteration cycles
        size_t block_idx_end;
        size_t block_idx_start = 0;//gates.size();
        gates.clear();
        int block_parameter_num;
        Gate* fixed_gate_post = new Gate( qbit_num );
        std::vector<Matrix, tbb::cache_aligned_allocator<Matrix>> gates_mtxs_post;

        // the identity matrix used in the calculations
        Matrix Identity =  create_identity( matrix_size );





        // maximal number of outer iterations overriden by config
        long long max_outer_iterations_loc;
        if ( config.count("max_outer_iterations") > 0 ) {
            config["max_outer_iterations"].get_property( max_outer_iterations_loc );
         
        }
        else {
            max_outer_iterations_loc =max_outer_iterations;
        }


        //measure the time for the decomposition
        tbb::tick_count start_time = tbb::tick_count::now();


        // Start the iterations
        long long iter_idx;
        for ( iter_idx=0; iter_idx<max_outer_iterations_loc; iter_idx++) {
        
            //determine the range of blocks to be optimalized togedther
            block_idx_end = block_idx_start + optimization_block;            
            if (block_idx_end > gates_loc.size()) {
                block_idx_end = gates_loc.size();
            }
                 
            // determine the number of free parameters to be optimized
            block_parameter_num = 0;
            for ( size_t block_idx=block_idx_start; block_idx < block_idx_end; block_idx++) {
                block_parameter_num = block_parameter_num + gates_loc[block_idx]->get_parameter_num();
            }

            // ***** get applied the fixed gates applied before the optimized gates *****
            if (block_idx_start > 0 ) {                

                
                std::vector<Gate*> gates_save = gates;
                gates.clear();
                gates.reserve( gates_save.size()-1 );
                for( std::vector<Gate*>::iterator gate_it = gates_save.begin(); gate_it != gates_save.end()-1; gate_it++ ) {
                    gates.push_back( *gate_it );
                }
                reset_parameter_start_indices();
                if ( use_float ) {
                    Matrix_real_float optimized_parameters_float(1, optimized_parameters_mtx.size());
                    for (int pidx=0; pidx<optimized_parameters_mtx.size(); pidx++) {
                        optimized_parameters_float[pidx] = static_cast<float>(optimized_parameters_mtx[pidx]);
                    }
                    Gates_block::apply_to( optimized_parameters_float, Umtx_float );
                }
                else {
                    apply_to( optimized_parameters_mtx, Umtx );
                }
                
                gates = gates_save;
            }
            else {
                Umtx = Umtx_loc.copy();              
                if ( use_float ) {
                    Umtx_float = Umtx_float_loc.copy();
                }
            }


            // clear the gate list used in the previous iterations
            gates.clear();

            if (optimized_parameters_mtx.size() > 0 ) {
                  optimized_parameters_mtx = Matrix_real(0,0);
            }




            // create a list of gates for the optimization process
            for ( size_t idx=block_idx_start; idx<block_idx_end; idx++ ) {
                gates.push_back( gates_loc[idx] );
            }
            
            // Create a general gate describing the cumulative effect of gates following the optimized gates
            if (block_idx_end < gates_loc.size()) {
                
                int parameter_idx = 0;
                for (size_t gate_idx=0; gate_idx<block_idx_end; gate_idx++) {
                    Gate* gate = gates_loc[gate_idx];
                    parameter_idx = parameter_idx +  gate->get_parameter_num();   
                }
                   
                Matrix_real optimized_parameters_partial = Matrix_real( optimized_parameters.get_data()+parameter_idx, 1, optimized_parameters.size()-parameter_idx );
                
                std::vector<Gate*> gates_save = gates;
                gates.clear();
                gates.reserve( gates_loc.size()-block_idx_end );
                for( std::vector<Gate*>::iterator gate_it = gates_loc.begin() + block_idx_end; gate_it != gates_loc.end(); gate_it++ ) {
                    gates.push_back( *gate_it );
                }
                reset_parameter_start_indices();
                
                if ( use_float ) {
                    Matrix_real_float optimized_parameters_partial_float(1, optimized_parameters_partial.size());
                    for (int pidx=0; pidx<optimized_parameters_partial.size(); pidx++) {
                        optimized_parameters_partial_float[pidx] = static_cast<float>(optimized_parameters_partial[pidx]);
                    }
                    Matrix_float post_mtx_float = create_identity_float( matrix_size );
                    Gates_block::apply_to( optimized_parameters_partial_float, post_mtx_float );

                    gates = gates_save;

                    fixed_gate_post->set_matrix( post_mtx_float.to_float64() );
                }
                else {
                    Matrix post_mtx = Identity.copy();
                    apply_to( optimized_parameters_partial, post_mtx );

                    gates = gates_save;

                    fixed_gate_post->set_matrix( post_mtx );
                }
                
                gates.push_back( fixed_gate_post ); 
                reset_parameter_start_indices();           
            }
            else {
                // release gate products
                //gates_mtxs_post.clear();
                fixed_gate_post->set_matrix( Identity );             
            }
             


            // constructing solution guess for the optimization
            parameter_num = block_parameter_num;
            Matrix_real solution_guess_tmp = Matrix_real(1, parameter_num);
            memcpy( solution_guess_tmp.get_data(), optimized_parameters.get_data() + pre_gate_parameter_num, parameter_num*sizeof(double) );
 

            // solve the optimization problem of the block
            solve_layer_optimization_problem( parameter_num, solution_guess_tmp );

            sync_optimized_parameters_float();

            // add the current minimum to the array of minimums and calculate the mean
            double minvec_mean = 0;
            for (int idx=min_vec_num-1; idx>0; idx--) {
                minimum_vec[idx] = minimum_vec[idx-1];
                minvec_mean = minvec_mean + minimum_vec[idx-1];
            }
            minimum_vec[0] = current_minimum;
            minvec_mean = minvec_mean + current_minimum;
            minvec_mean = minvec_mean/min_vec_num;



            // store the obtained optimalized parameters for the block
            memcpy( optimized_parameters.get_data()+pre_gate_parameter_num, optimized_parameters_mtx.get_data(), parameter_num*sizeof(double) );     


            if (block_idx_end == gates_loc.size()) {
                // restart the block-wise iteration again
                block_idx_start = 0;
                pre_gate_parameter_num = 0;
            }
            else {
                // mode the block-wies optimization to the next block
                block_idx_start = block_idx_start + optimization_block;
                pre_gate_parameter_num = pre_gate_parameter_num + block_parameter_num;
            }


            // optimization result is displayed in each 500th iteration
            if (iter_idx % 500 == 0) {                
                tbb::tick_count current_time = tbb::tick_count::now();
                std::stringstream sstream;
          sstream << "The minimum with " << layer_num << " layers after " << iter_idx << " outer iterations is " << current_minimum << " calculated in " << (current_time - start_time).seconds() << " seconds" << std::endl;
          print(sstream, 2);            
                start_time = tbb::tick_count::now();
            }


            // calculate the variance of the last 10 minimums
            double minvec_std = 0.0;
            for ( int kdx=0; kdx<min_vec_num; kdx++ ) {
                double tmp = minimum_vec[kdx] - minvec_mean;
                minvec_std += tmp*tmp;
            }
            minvec_std = sqrt(minvec_std/(min_vec_num-1));

            // conditions to break the iteration cycles
            if (std::abs(minvec_std/minimum_vec[min_vec_num-1]) < convergence_threshold ) {              
          std::stringstream sstream;
             sstream << "The iterations converged to minimum " << current_minimum << " after " << iter_idx << " outer iterations with " << layer_num << " layers" << std::endl;
          print(sstream, 1);             
                break;
            }
            else if (check_optimization_solution()) {
               std::stringstream sstream;
          sstream << "The minimum with " << layer_num << " layers after " << iter_idx << " outer iterations is " << current_minimum << std::endl;
          print(sstream, 1);                           
                break;
            }

        }


        if (iter_idx == max_outer_iterations_loc && max_outer_iterations_loc>1) {            
          std::stringstream sstream;
          sstream << "Reached maximal number of outer iterations" << std::endl << std::endl;
          print(sstream, 1);
        }

        // restoring the parameters to originals
        optimization_block = optimization_block_loc;

        // store the result of the optimization
        gates.clear();
        gates = gates_loc;
        reset_parameter_start_indices();

        parameter_num = parameter_num_loc;


        optimized_parameters_mtx = Matrix_real( 1, parameter_num );

        memcpy( optimized_parameters_mtx.get_data(), optimized_parameters.get_data(), parameter_num*sizeof(double) );
        sync_optimized_parameters_float();

        delete(fixed_gate_post);

        // restore the original unitary
        Umtx = Umtx_loc; // copy?
        if ( use_float ) {
            Umtx_float = Umtx_float_loc;
        }


}




void Decomposition_Base::solve_layer_optimization_problem( int num_of_parameters, Matrix_real solution_guess) {
    return;
}




double Decomposition_Base::optimization_problem( const double* parameters ) {
        return current_minimum;
}





bool Decomposition_Base::check_optimization_solution() {

        double optimization_tolerance_loc;
        if ( config.count("optimization_tolerance") > 0 ) {
             config["optimization_tolerance"].get_property( optimization_tolerance_loc );  
        }
        else {
            optimization_tolerance_loc = optimization_tolerance;
        }       

        return (std::abs(current_minimum - global_target_minimum) < optimization_tolerance_loc);

}


Matrix Decomposition_Base::get_Umtx() {
    return Umtx;
}

Matrix_float Decomposition_Base::get_Umtx_float() {
    return Umtx_float;
}

bool Decomposition_Base::get_use_float() const {
    return use_float;
}


int Decomposition_Base::get_Umtx_size() {
    return matrix_size;
}

Matrix_real Decomposition_Base::get_optimized_parameters() {    
    
    return optimized_parameters_mtx.copy();

}

Matrix_real_float Decomposition_Base::get_optimized_parameters_float() {

    sync_optimized_parameters_float();
    return optimized_parameters_mtx_float.copy();

}

void Decomposition_Base::get_optimized_parameters( double* ret ) {
    memcpy(ret, optimized_parameters_mtx.get_data(), parameter_num*sizeof(double));
    return;
}


void Decomposition_Base::set_optimized_parameters( double* parameters, int num_of_parameters ) {

    if ( num_of_parameters == 0 ) {
        optimized_parameters_mtx = Matrix_real(1, num_of_parameters);
        sync_optimized_parameters_float();
        return;
    }

    if ( parameter_num != num_of_parameters ) {
        std::string err("Decomposition_Base::set_optimized_parameters: The number of parameters does not match with the free parameters of the circuit.");
        throw err;
    }

    optimized_parameters_mtx = Matrix_real(1, num_of_parameters);
    memcpy( optimized_parameters_mtx.get_data(), parameters, num_of_parameters*sizeof(double) );
    sync_optimized_parameters_float();

    return;
}


Matrix Decomposition_Base::get_decomposed_matrix() {
        if ( use_float ) {
            sync_optimized_parameters_float();
            Matrix_float ret = Umtx_float.copy();
            Gates_block::apply_to( optimized_parameters_mtx_float, ret );
            return ret.to_float64();
        }

        Matrix ret = Umtx.copy();
        apply_to( optimized_parameters_mtx, ret );
        
        return ret;
}



Matrix
Decomposition_Base::apply_gate( Matrix& gate_mtx, Matrix& input_matrix ) {

    // Getting the transformed state upon the transformation given by gate
    return dot( gate_mtx, input_matrix );

}

int Decomposition_Base::set_max_layer_num( int n, int max_layer_num_in ) {

    std::map<int,int>::iterator key_it = max_layer_num.find( n );

    if ( key_it != max_layer_num.end() ) {
        max_layer_num.erase( key_it );
    }

    max_layer_num.insert( std::pair<int, int>(n,  max_layer_num_in) );

    return 0;

}


int Decomposition_Base::set_max_layer_num( std::map<int, int> max_layer_num_in ) {


    for ( std::map<int,int>::iterator it = max_layer_num_in.begin(); it!=max_layer_num_in.end(); it++) {
        set_max_layer_num( it->first, it->second );
    }

    return 0;

}


void Decomposition_Base::reorder_qubits( std::vector<int>  qbit_list) {


    Gates_block::reorder_qubits( qbit_list);

    // now reorder the unitary to be decomposed

    // obtain the permutation indices of the matrix rows/cols
    std::vector<int> perm_indices;
    perm_indices.reserve(matrix_size);

    for (int idx=0; idx<matrix_size; idx++) {
       
        int row_idx=0;

        // contruct the index corresponding to the premuted qubits
        for( int qbit_idx=0; qbit_idx<qbit_num; qbit_idx++ ) {

            // state of qubit qbit_list[qbit_idx] in the index idx
            int qbit_state = ( idx >> qbit_list[qbit_idx] ) & 1;

            row_idx = row_idx + qbit_state*Power_of_2(qbit_idx);
        }

        perm_indices.push_back(row_idx);

    }

    // reordering the matrix elements
    Matrix reordered_mtx = Matrix(matrix_size, matrix_size);
    for (int row_idx = 0; row_idx<matrix_size; row_idx++) {
        for (int col_idx = 0; col_idx<matrix_size; col_idx++) {
            int index_reordered = perm_indices[row_idx]*Umtx.rows + perm_indices[col_idx];
            int index_umtx = row_idx*Umtx.rows + col_idx;
            reordered_mtx[index_reordered] = Umtx[index_umtx];
        }
    }

    Umtx = reordered_mtx;

}



int Decomposition_Base::set_iteration_loops( int n, int iteration_loops_in ) {

    std::map<int,int>::iterator key_it = iteration_loops.find( n );

    if ( key_it != iteration_loops.end() ) {
        iteration_loops.erase( key_it );
    }

    iteration_loops.insert( std::pair<int, int>(n,  iteration_loops_in) );

    return 0;

}


int Decomposition_Base::set_iteration_loops( std::map<int, int> iteration_loops_in ) {

    for ( std::map<int,int>::iterator it=iteration_loops_in.begin(); it!= iteration_loops_in.end(); it++ ) {
        set_iteration_loops( it->first, it->second );
    }

    return 0;

}



void Decomposition_Base::Init_max_layer_num() {

    // default layer numbers
    max_layer_num_def[2] = 3;
    max_layer_num_def[3] = 14;
    max_layer_num_def[4] = 60;
    max_layer_num_def[5] = 240;
    max_layer_num_def[6] = 1350;
    max_layer_num_def[7] = 7000;//6180;

}








void Decomposition_Base::set_optimization_tolerance( double tolerance_in ) {

    optimization_tolerance = tolerance_in;
    return;
}



void Decomposition_Base::set_convergence_threshold( double convergence_threshold_in ) {

    convergence_threshold = convergence_threshold_in;
    return;
}

double Decomposition_Base::get_decomposition_error( ) {

    return decomposition_error;

}




double Decomposition_Base::get_current_minimum( ) {

    return current_minimum;

}

std::string Decomposition_Base::get_project_name(){
     return project_name;
}

void Decomposition_Base::set_project_name(std::string& project_name_new){
     project_name = project_name_new;
     return;
}


void Decomposition_Base::calculate_new_global_phase_factor(QGD_Complex16 global_phase_factor_new){
     global_phase_factor = mult(global_phase_factor, global_phase_factor_new);
     return;
}

QGD_Complex16 Decomposition_Base::get_global_phase_factor( ){
     return global_phase_factor;
}

void Decomposition_Base::set_global_phase(double new_global_phase){
     global_phase_factor.real = sqrt(2)*cos(new_global_phase);
     global_phase_factor.imag = sqrt(2)*sin(new_global_phase);
     return;
}

void Decomposition_Base::apply_global_phase_factor(QGD_Complex16 global_phase_factor, Matrix& u3_gate){
     mult(global_phase_factor, u3_gate);
     return;
}

void Decomposition_Base::apply_global_phase_factor(){
     mult(global_phase_factor, Umtx);
     set_global_phase(0);
     return;
}


void Decomposition_Base::export_unitary(std::string& filename){
     FILE* pFile;
     if (project_name != ""){filename = project_name + "_" + filename;}

     const char* c_filename = filename.c_str();
     pFile = fopen(c_filename, "wb");
     if (pFile==NULL) {
            fputs ("File error",stderr); 
            std::string error("Cannot open file.");
            throw error;
        }


     fwrite(&Umtx.rows, sizeof(int), 1, pFile);
     fwrite(&Umtx.cols, sizeof(int), 1, pFile);          
     fwrite(Umtx.get_data(), sizeof(QGD_Complex16), Umtx.size(), pFile);
     fclose(pFile);
     return;
}



Matrix Decomposition_Base::import_unitary_from_binary(std::string& filename){
     FILE* pFile;

     if (project_name != ""){filename = project_name + "_"  + filename;}

     const char* c_filename = filename.c_str();
     int cols;
     int rows;
     pFile = fopen(c_filename, "rb");
     if (pFile==NULL) {
            fputs ("File error",stderr); 
            exit (1);
        }

    fread_wrapper(&rows, sizeof(int), 1, pFile);
     fread_wrapper(&cols, sizeof(int), 1, pFile);


     Matrix Umtx_ = Matrix(rows, cols);

     fread_wrapper(Umtx_.get_data(), sizeof(QGD_Complex16), rows*cols, pFile);
    fclose(pFile);
     return Umtx_;
}


int Decomposition_Base::get_parallel_configuration() {

    int parallel;
    if ( config.count("parallel") > 0 ) { 
         long long value;                   
         config["parallel"].get_property( value );  
         parallel = (int) value;
    }
    else {
        parallel = 2;          
    }


    return parallel;

}


void Decomposition_Base::set_qbit_num( int qbit_num_in ) {

    // check the size of the unitary
    int matrix_size_loc = 1 << qbit_num_in;
    if ( matrix_size_loc != matrix_size ) {
        std::string err("Decomposition_Base::set_qbit_num: The new number of qubits is not in line with the input unitary to be decomposed");
        throw err;
    }

    // setting the number of qubits
    Gates_block::set_qbit_num(qbit_num_in);

    
}