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| def | __init__ (self) |
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| def | init (self, plugid, win, mgr) |
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| def | __init__ (self, name) |
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| def | getIcon (self, obj) |
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| def | getObjFiles (self, obj) |
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| def | getReprTypes (self, obj) |
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| def | getReprParams (self, obj, reprtype) |
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| def | createObjPropBox (self, obj) |
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| def | setCTImageRange (self, obj, isCT) |
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| def | getMenu (self, obj) |
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| def | objectMenuItem (self, obj, item) |
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| def | updateObjPropBox (self, obj, prop) |
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| def | updateReprPropBox (self, rep, prop) |
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| def | createReprPropBox (self, rep) |
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| def | applyMaterial (self, rep, mat, kwargs) |
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| def | createRepr (self, obj, reprtype, kwargs) |
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| def | createSceneObject (self, name, images, source=None, isTimeDependent=None) |
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| def | clone (self, obj, name) |
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| def | cropXY (self, obj, name, minx, miny, maxx, maxy) |
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| def | extractTimesteps (self, obj, name, indices=None, timesteps=None, setTimestep=False) |
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| def | createImageStackObject (self, name, width, height, slices, timesteps=1, pos=vec3(), rot=rotator(), spacing=vec3(1)) |
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| def | createRespacedObject (self, obj, name, spacing=vec3(1)) |
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| def | createIntersectObject (self, name, objs, timesteps=1, spacing=vec3(1)) |
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| def | createTestImage (self, w, h, d, timesteps=1, pos=vec3(), rot=rotator(), spacing=vec3(1)) |
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| def | createSequence (self, name, objs, timesteps=None) |
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| def | createObjectFromArray (self, name, array, interval=1.0, toffset=0, pos=vec3(), rot=rotator(), spacing=vec3(1), task=None) |
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| def | getImageObjectArray (self, obj, datatype=float) |
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| def | __init__ (self, name) |
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| def | init (self, plugid, win, mgr) |
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| def | cleanup (self) |
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| def | findObject (self, name, assertFound=True) |
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| def | removeFilesTask (self, fileglob) |
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| def | getScriptCode (self, obj, kwargs) |
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| def | getIcon (self, obj) |
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| def | getMenu (self, obj) |
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| def | getHelp (self) |
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| def | acceptFile (self, filename) |
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| def | loadObject (self, filename, name=None, kwargs) |
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| def | saveObject (self, obj, path, overwrite=False, setFilenames=False, kwargs) |
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| def | checkFileOverwrite (self, obj, dirpath, name=None) |
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| def | getObjFiles (self, obj) |
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| def | renameObjFiles (self, obj, oldname, overwrite=False) |
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| def | copyObjFiles (self, obj, sdir, overwrite=False) |
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| def | removeObject (self, obj) |
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| def | createRepr (self, obj, reprtype, kwargs) |
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| def | getReprParams (self, obj, reprtype) |
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| def | getReprParamHelp (self, obj, reprtype) |
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| def | getReprTypes (self, obj) |
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| def | createHandles (self, rep, kwargs) |
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| def | updateObjPropBox (self, obj, prop) |
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| def | updateReprPropBox (self, rep, prop) |
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| def | createObjPropBox (self, obj) |
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| def | createReprPropBox (self, rep) |
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| def | addSceneObject (self, obj) |
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| def | addSceneObjectRepr (self, rep) |
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| def | applyMaterial (self, rep, mat, kwargs) |
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| def | objectMenuItem (self, obj, item) |
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| def | init (self, plugid, win, mgr) |
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| def | getCWD (self) |
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| def | getNiftiFile (self, name) |
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| def | getLogFile (self, name) |
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| def | getLocalFile (self, name) |
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| def | getUniqueObjName (self, name) |
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| def | getTrackingDirs (self, root=None) |
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| def | addObject (self, obj) |
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| def | loadNiftiFiles (self, filenames, task) |
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| def | getUniqueShortName (self, comps, kwargs) |
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| def | getUniqueLocalFile (self, name) |
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| def | getServerAddrPort (self) |
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| def | setServerAddrPort (self, addr, port) |
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| def | saveToNifti (self, objs, setObjArgs=False) |
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| def | correctNiftiParams (self, sourceobj, destfile, makeProspective=False) |
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| def | applyImageDof (self, inname, outname, doffile, cwd, correctNifti=True) |
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| def | load3DTagSeries (self, tagobj, makeProspective, loadPlanes=False, makeDetag=True, spacing=vec3(1), tryFix=True) |
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| def | createSegObject (self, srcname, segtype) |
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| def | createTimeRegStack (self, template, stack, trname=None, loadObject=True) |
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| def | spatialCorrect (self, target, before, after, prefix, extras=[], xyOnly=True, trans=True, logfile=None, cwd=None) |
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| def | alignShortStack (self, saxname, segname, templatename=None) |
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| def | alignIntersectImages (self, volume, intersects, tempDir=None, numIters=1, dilation=5, moveScale=0.1, task=None) |
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| def | rigidRegisterStack (self, subjectname, rtargetname, htargetname, finalname, doffile, paramfile, correctNifti) |
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| def | rigidRegisterStackList (self, subjectname, intermedname, targetnames) |
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| def | readPolyNodes (self, filename) |
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| def | writePolyNodes (self, filename, nodes) |
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| def | createImageGrid (self, obj, w, h, d) |
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| def | createIsotropicObject (self, obj, cropEmpty, spacing=1.0, task=None) |
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| def | setObjectTimestep (self, objname, start, step, task=None) |
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| def | invertTimesteps (self, sourceobj) |
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| def | offsetTimesteps (self, sourceobj, suffix, value, makeProspective=False) |
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| def | resampleObject (self, srcname, templatename, isIsotropic) |
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| def | extractTimestepsToObject (self, srcname, indices=None, timesteps=None) |
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| def | reorderMulticycleImage (self, srcname, starttime, timestep, task) |
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| def | cropMotionObject (self, srcname, threshold, filtersize, task) |
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| def | emptyCropObject (self, imgobj, loadObj=True) |
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| def | refImageCrop (self, imgname, refname, mx, my) |
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| def | extendImageStack (self, stack, mx=0, my=0, mz=0, value=0) |
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| def | extendImageObject (self, obj, mx=0, my=0, mz=0, value=0, task=None) |
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| def | registerImage2D (self, src, tgt, tempDir=None, spacing=10, model='BSplineFFD') |
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| def | interpolateImages2D (self, im0, im1, numImgs, tempDir=None) |
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| def | interpolateImageObject (self, obj, numAddedSlices, tempDir=None, task=None) |
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| def | applyMotionTrack (self, obj_or_name, trackname_or_dir, addObject=True) |
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| def | applyMotionTrackPoints (self, dirname, pts) |
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| def | isServerAlive (self, serveraddr=None, serverport=None) |
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| def | sendServerMsg (self, msg, args=(), buffsize=4096, timeout=10.0, serveraddr=None, serverport=None) |
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| def | startMotionTrackServer (self, addr=None, port=None) |
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| def | startMotionTrackJob (self, trackname, maskname, dirname, adaptive, chosenparam) |
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| def | startGPUNRegMotionTrack (self, imgname, maskname, trackname, paramfile) |
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| def | startRegisterMotionTrack (self, imgname, maskname, trackname, paramfile, model=None, onefile=False, task=None) |
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| def | checkMotionTrackJobs (self, jids) |
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Public Member Functions inherited from ImageScenePlugin