eidolon.plugins.IRTKPlugin Namespace Reference

Classes
class	BasicIRTKPlugin
class	IRTKPluginMixin
class	MotionTrackServerDialog
class	MotionTrackServerWidget

Functions
def	isTrackDir (path)
def	isPositiveDefinite (mat)
def	detagImage (obj, coresize, revert=False)
def	applyMotionTrackRange (process, exefile, cwd, isInvert, filelists, extraArgs, environ)
def	applyMotionTrackTask (exefile, cwd, isInvert, filelists, extraArgs=[], numProcs=0, task=None)

Variables
	InterpTypes
	ServerMsgs
	TrackTypes = enum('motiontrackmultimage','gpunreg','mirtkregister','mirtkregister1file')
	JobMetaValues
	EnvironVars = enum('LD_LIBRARY_PATH','DYLD_LIBRARY_PATH')
string	trackconfname = 'track.ini'

Function Documentation

applyMotionTrackRange()

def eidolon.plugins.IRTKPlugin.applyMotionTrackRange	(		process,
			exefile,
			cwd,
			isInvert,
			filelists,
			extraArgs,
			environ
	)

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applyMotionTrackTask()

def eidolon.plugins.IRTKPlugin.applyMotionTrackTask	(		exefile,
			cwd,
			isInvert,
			filelists,
			extraArgs = [],
			numProcs = 0,
			task = None
	)

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detagImage()

def eidolon.plugins.IRTKPlugin.detagImage	(		obj,
			coresize,
			revert = False
	)

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isPositiveDefinite()

def eidolon.plugins.IRTKPlugin.isPositiveDefinite

(

mat

)

Returns True if `mat' is a positive definite matrix (ie. all positive eigenvalues).

isTrackDir()

def eidolon.plugins.IRTKPlugin.isTrackDir

(

path

)

Returns True if `path' is the path to a directory containing tracking information. This is done asynchronously with
a daemon thread. The function will block for up to 1 second and return False if an answer isn't calculated by then.
This ensures the UI is not held up by a slow file system.

Variable Documentation

EnvironVars

EnvironVars = enum('LD_LIBRARY_PATH','DYLD_LIBRARY_PATH')

InterpTypes

InterpTypes

Initial value:

= enum(
    ('Linear','-linear'),
    ('Bezier Spline','-bspline'),
    ('Cubic Spline','-cspline'),
    ('Truncated Sinc','-sinc'),
    ('Shape Based','-sbased'),
    ('Gaussian','-gaussian sigma')
)

JobMetaValues

JobMetaValues

Initial value:

= enum(
    'pid','rootdir','numtrackfiles','timesteps','tracktype','trackobj','maskobj','trackfile','maskfile',
    'paramfile','adaptive','resultcode','startdate','enddate','transform','pixdim',
    doc='Names of fields in job/track ini files storing metadata about the associated operation/job'
)

ServerMsgs

ServerMsgs

Initial value:

= enum(
    ('OK',(),'OK Server Response; no values'),
    ('Except',(Exception,str),'Exception from Server; exception value, stack trace string info'),
    ('Stat',(int,),'Status Request for Job; Job ID value'),
    ('RStat',(int,int,int,str),'Status Response; process exit code (None if still running), # of files so far, total # of files, job dir'),
    ('StartMotionTrack',(bool,str,str,str,str,str,float,dict,str),'Sending motion track job to server;true if data is file path, file blob otherwise, track file,mask file, param filename, directory name, adaptive, config values dict, root directory'),
    ('RStart',(int,),'Job Send Response; Job ID value'),
    ('GetResult',(int,bool),'Get job results; job ID value, true if absolute file paths are requested'),
    ('RGetResult',(list,),'Returned job results; list of file paths or file data blobs'),
    ('Check',(),'Request the username of whoever started the server; empty'),
    ('RCheck',(str,),'Username response; username string'),
    ('Kill',(int,),'Job kill command; Job ID value'),
    ('RKill',(bool,),'Job kill response; True if successful, False if job was not running'),
    valtype=(tuple,str),
    doc='Server request and response messages, containing the types of the arguments and a description'
)

trackconfname

string trackconfname = 'track.ini'

TrackTypes

TrackTypes = enum('motiontrackmultimage','gpunreg','mirtkregister','mirtkregister1file')