| Accessible() | SurgSim::Framework::Accessible | |
| addExternalGeneralizedForce(std::shared_ptr< Localization > localization, const SurgSim::Math::Vector &generalizedForce, const SurgSim::Math::Matrix &K=SurgSim::Math::Matrix(), const SurgSim::Math::Matrix &D=SurgSim::Math::Matrix()) override | SurgSim::Physics::Fem2DRepresentation | virtual |
| addFemElement(const std::shared_ptr< FemElement > element) | SurgSim::Physics::FemRepresentation | |
| addFemElementsForce(SurgSim::Math::Vector *f, const SurgSim::Math::OdeState &state, double scale=1.0) | SurgSim::Physics::FemRepresentation | protected |
| addGravityForce(SurgSim::Math::Vector *f, const SurgSim::Math::OdeState &state, double scale=1.0) | SurgSim::Physics::FemRepresentation | protected |
| addRayleighDampingForce(SurgSim::Math::Vector *f, const SurgSim::Math::OdeState &state, bool useGlobalMassMatrix=false, bool useGlobalStiffnessMatrix=false, double scale=1.0) | SurgSim::Physics::FemRepresentation | protected |
| afterUpdate(double dt) override | SurgSim::Physics::DeformableRepresentation | virtual |
| applyCompliance(const Math::OdeState &state, const Math::Matrix &b) override | SurgSim::Physics::FemRepresentation | virtual |
| applyCorrection(double dt, const Eigen::VectorBlock< SurgSim::Math::Vector > &deltaVelocity) override | SurgSim::Physics::DeformableRepresentation | virtual |
| beforeUpdate(double dt) override | SurgSim::Physics::FemRepresentation | virtual |
| calculateComplianceWarpingTransformation(const SurgSim::Math::OdeState &state) | SurgSim::Physics::FemRepresentation | protectedvirtual |
| Component(const std::string &name) | SurgSim::Framework::Component | explicit |
| computeD(const SurgSim::Math::OdeState &state) override | SurgSim::Physics::FemRepresentation | protectedvirtual |
| computeF(const SurgSim::Math::OdeState &state) override | SurgSim::Physics::FemRepresentation | protectedvirtual |
| computeFMDK(const SurgSim::Math::OdeState &state) override | SurgSim::Physics::FemRepresentation | protectedvirtual |
| computeK(const SurgSim::Math::OdeState &state) override | SurgSim::Physics::FemRepresentation | protectedvirtual |
| computeM(const SurgSim::Math::OdeState &state) override | SurgSim::Physics::FemRepresentation | protectedvirtual |
| createLocalization(const SurgSim::DataStructures::Location &location) override | SurgSim::Physics::Fem2DRepresentation | virtual |
| deactivateAndReset() | SurgSim::Physics::DeformableRepresentation | |
| decode(const YAML::Node &node, const std::vector< std::string > &ignoredProperties=std::vector< std::string >()) | SurgSim::Framework::Accessible | |
| DecoderType typedef (defined in SurgSim::Framework::Accessible) | SurgSim::Framework::Accessible | |
| DeformableRepresentation(const std::string &name) | SurgSim::Physics::DeformableRepresentation | explicit |
| doInitialize() override | SurgSim::Physics::Fem2DRepresentation | protectedvirtual |
| doRetire() | SurgSim::Framework::Component | virtual |
| doWakeUp() override | SurgSim::Physics::DeformableRepresentation | protectedvirtual |
| driveSceneElementPose(const SurgSim::Math::RigidTransform3d &pose) | SurgSim::Physics::Representation | protected |
| encode() const | SurgSim::Framework::Accessible | |
| EncoderType typedef (defined in SurgSim::Framework::Accessible) | SurgSim::Framework::Accessible | |
| FactoryType typedef (defined in SurgSim::Framework::FactoryBase1< Component, std::string >) | SurgSim::Framework::FactoryBase1< Component, std::string > | |
| Fem2DRepresentation(const std::string &name) | SurgSim::Physics::Fem2DRepresentation | explicit |
| FemRepresentation(const std::string &name) | SurgSim::Physics::FemRepresentation | explicit |
| forwardProperty(const std::string &name, const Accessible &target, const std::string &targetProperty) | SurgSim::Framework::Accessible | |
| getClassName() const | SurgSim::Framework::Component | virtual |
| getCollisionRepresentation() const | SurgSim::Physics::Representation | |
| getComplianceMatrix() const override | SurgSim::Physics::FemRepresentation | virtual |
| getComplianceWarping() const | SurgSim::Physics::FemRepresentation | |
| getConstraintImplementation(SurgSim::Physics::ConstraintType type) | SurgSim::Physics::Representation | |
| getCurrentState() const | SurgSim::Physics::DeformableRepresentation | virtual |
| getD() const | SurgSim::Math::OdeEquation | |
| getExternalGeneralizedDamping() const | SurgSim::Physics::DeformableRepresentation | |
| getExternalGeneralizedForce() const | SurgSim::Physics::DeformableRepresentation | |
| getExternalGeneralizedStiffness() const | SurgSim::Physics::DeformableRepresentation | |
| getF() const | SurgSim::Math::OdeEquation | |
| getFactory() | SurgSim::Framework::FactoryBase1< Component, std::string > | inlinestatic |
| getFem() const | SurgSim::Physics::Fem2DRepresentation | |
| getFemElement(size_t femElementId) | SurgSim::Physics::FemRepresentation | |
| getFemElementType() const | SurgSim::Physics::FemRepresentation | |
| getFinalState() const | SurgSim::Physics::DeformableRepresentation | virtual |
| getFullName() const | SurgSim::Framework::Component | |
| getGravity() const | SurgSim::Physics::Representation | protected |
| getInitialState() const | SurgSim::Math::OdeEquation | |
| getIntegrationScheme() const | SurgSim::Physics::DeformableRepresentation | |
| getK() const | SurgSim::Math::OdeEquation | |
| getLinearSolver() const | SurgSim::Physics::DeformableRepresentation | |
| getLocalPose() const | SurgSim::Framework::Representation | virtual |
| getM() const | SurgSim::Math::OdeEquation | |
| getMassLumping() const | SurgSim::Physics::FemRepresentation | |
| getName() const | SurgSim::Framework::Component | |
| getNodeTransformation(const SurgSim::Math::OdeState &state, size_t nodeId) const | SurgSim::Physics::FemRepresentation | protectedvirtual |
| getNumDof() const | SurgSim::Physics::Representation | |
| getNumDofPerNode() const | SurgSim::Physics::DeformableRepresentation | |
| getNumFemElements() const | SurgSim::Physics::FemRepresentation | |
| getOdeSolver() const | SurgSim::Physics::DeformableRepresentation | |
| getPose() const | SurgSim::Framework::Representation | virtual |
| getPoseComponent() | SurgSim::Framework::Component | protectedvirtual |
| getPoseComponent() const | SurgSim::Framework::Component | protectedvirtual |
| getPreviousState() const | SurgSim::Physics::DeformableRepresentation | virtual |
| getProperties() (defined in SurgSim::Framework::Accessible) | SurgSim::Framework::Accessible | |
| getRayleighDampingMass() const | SurgSim::Physics::FemRepresentation | |
| getRayleighDampingStiffness() const | SurgSim::Physics::FemRepresentation | |
| getRuntime() const | SurgSim::Framework::Component | |
| getScene() | SurgSim::Framework::Component | |
| getSceneElement() | SurgSim::Framework::Component | |
| getSceneElement() const | SurgSim::Framework::Component | |
| getSharedPtr() | SurgSim::Framework::Component | |
| GetterType typedef (defined in SurgSim::Framework::Accessible) | SurgSim::Framework::Accessible | |
| getTotalMass() const | SurgSim::Physics::FemRepresentation | |
| getUuid() const | SurgSim::Framework::Component | |
| getValue(const std::string &name) const | SurgSim::Framework::Accessible | |
| getValue(const std::string &name) const | SurgSim::Framework::Accessible | |
| getValue(const std::string &name, T *value) const | SurgSim::Framework::Accessible | |
| getValue(const std::string &name) const (defined in SurgSim::Framework::Accessible) | SurgSim::Framework::Accessible | |
| hasD() const (defined in SurgSim::Math::OdeEquation) | SurgSim::Math::OdeEquation | |
| hasF() const (defined in SurgSim::Math::OdeEquation) | SurgSim::Math::OdeEquation | |
| hasK() const (defined in SurgSim::Math::OdeEquation) | SurgSim::Math::OdeEquation | |
| hasM() const (defined in SurgSim::Math::OdeEquation) | SurgSim::Math::OdeEquation | |
| initialize(const std::weak_ptr< Runtime > &runtime) | SurgSim::Framework::Component | |
| interpolatePreviousState(double t) | SurgSim::Physics::DeformableRepresentation | virtual |
| isActive() const | SurgSim::Framework::Component | |
| isAwake() const | SurgSim::Framework::Component | |
| isComplianceWarpingSynchronous() const | SurgSim::Physics::FemRepresentation | |
| isDrivingSceneElementPose() | SurgSim::Physics::Representation | |
| isGravityEnabled() const | SurgSim::Physics::Representation | |
| isInitialComplianceMatrixComputed() const | SurgSim::Physics::FemRepresentation | protected |
| isInitialized() const | SurgSim::Framework::Component | |
| isLocalActive() const | SurgSim::Framework::Component | |
| isReadable(const std::string &name) const | SurgSim::Framework::Accessible | |
| isValidCoordinate(const SurgSim::DataStructures::IndexedLocalCoordinate &coordinate) const | SurgSim::Physics::FemRepresentation | virtual |
| isWriteable(const std::string &name) const | SurgSim::Framework::Accessible | |
| loadFem(const std::string &fileName) override | SurgSim::Physics::Fem2DRepresentation | virtual |
| m_collisionRepresentation | SurgSim::Physics::Representation | protected |
| m_complianceWarpingMatrix | SurgSim::Physics::FemRepresentation | protected |
| m_complianceWarpingTransformation | SurgSim::Physics::FemRepresentation | protected |
| m_complianceWarpingTransformationForCalculation | SurgSim::Physics::FemRepresentation | protected |
| m_currentState | SurgSim::Physics::DeformableRepresentation | protected |
| m_D | SurgSim::Math::OdeEquation | protected |
| m_externalGeneralizedDamping (defined in SurgSim::Physics::DeformableRepresentation) | SurgSim::Physics::DeformableRepresentation | protected |
| m_externalGeneralizedForce (defined in SurgSim::Physics::DeformableRepresentation) | SurgSim::Physics::DeformableRepresentation | protected |
| m_externalGeneralizedStiffness (defined in SurgSim::Physics::DeformableRepresentation) | SurgSim::Physics::DeformableRepresentation | protected |
| m_f | SurgSim::Math::OdeEquation | protected |
| m_femElements | SurgSim::Physics::FemRepresentation | protected |
| m_femElementType | SurgSim::Physics::FemRepresentation | protected |
| m_finalState | SurgSim::Physics::DeformableRepresentation | protected |
| m_hasExternalGeneralizedForce | SurgSim::Physics::DeformableRepresentation | protected |
| m_initialState | SurgSim::Math::OdeEquation | protected |
| m_initState (defined in SurgSim::Math::OdeEquation) | SurgSim::Math::OdeEquation | protected |
| m_integrationScheme | SurgSim::Physics::DeformableRepresentation | protected |
| m_isComplianceWarpingSynchronous | SurgSim::Physics::FemRepresentation | protected |
| m_isInitialComplianceMatrixComputed | SurgSim::Physics::FemRepresentation | protected |
| m_K | SurgSim::Math::OdeEquation | protected |
| m_linearSolver | SurgSim::Physics::DeformableRepresentation | protected |
| m_logger | SurgSim::Physics::Representation | protected |
| m_M | SurgSim::Math::OdeEquation | protected |
| m_massPerNode | SurgSim::Physics::FemRepresentation | protected |
| m_newState | SurgSim::Physics::DeformableRepresentation | protected |
| m_numDofPerNode | SurgSim::Physics::DeformableRepresentation | protected |
| m_odeSolver | SurgSim::Physics::DeformableRepresentation | protected |
| m_previousExternalGeneralizedDamping (defined in SurgSim::Physics::DeformableRepresentation) | SurgSim::Physics::DeformableRepresentation | protected |
| m_previousExternalGeneralizedStiffness (defined in SurgSim::Physics::DeformableRepresentation) | SurgSim::Physics::DeformableRepresentation | protected |
| m_previousHasExternalGeneralizedForce (defined in SurgSim::Physics::DeformableRepresentation) | SurgSim::Physics::DeformableRepresentation | protected |
| m_previousState | SurgSim::Physics::DeformableRepresentation | protected |
| m_task (defined in SurgSim::Physics::FemRepresentation) | SurgSim::Physics::FemRepresentation | protected |
| m_useComplianceWarping | SurgSim::Physics::FemRepresentation | protected |
| massCoefficient (defined in SurgSim::Physics::FemRepresentation) | SurgSim::Physics::FemRepresentation | |
| OdeEquation() (defined in SurgSim::Math::OdeEquation) | SurgSim::Math::OdeEquation | inline |
| removeAccessors(const std::string &name) | SurgSim::Framework::Accessible | |
| Representation(const std::string &name) | SurgSim::Physics::Representation | explicit |
| resetState() override | SurgSim::Physics::DeformableRepresentation | virtual |
| retire() | SurgSim::Framework::Component | |
| setAccessors(const std::string &name, GetterType getter, SetterType setter) | SurgSim::Framework::Accessible | |
| setCollisionRepresentation(std::shared_ptr< SurgSim::Collision::Representation > representation) override | SurgSim::Physics::DeformableRepresentation | virtual |
| setComplianceWarping(bool useComplianceWarping) | SurgSim::Physics::FemRepresentation | |
| setComplianceWarpingSynchronous(bool complianceWarpingSynchronous) | SurgSim::Physics::FemRepresentation | |
| setDecoder(const std::string &name, DecoderType decoder) | SurgSim::Framework::Accessible | |
| setFem(std::shared_ptr< SurgSim::Framework::Asset > mesh) | SurgSim::Physics::Fem2DRepresentation | |
| setFemElementType(const std::string &type) | SurgSim::Physics::FemRepresentation | virtual |
| setGetter(const std::string &name, GetterType func) | SurgSim::Framework::Accessible | |
| setInitialState(std::shared_ptr< SurgSim::Math::OdeState > initialState) | SurgSim::Physics::DeformableRepresentation | virtual |
| setIntegrationScheme(SurgSim::Math::IntegrationScheme integrationScheme) | SurgSim::Physics::DeformableRepresentation | |
| setIsDrivingSceneElementPose(bool isDrivingSceneElementPose) | SurgSim::Physics::Representation | |
| setIsGravityEnabled(bool isGravityEnabled) | SurgSim::Physics::Representation | |
| setIsInitialComplianceMatrixComputed(bool flag) | SurgSim::Physics::FemRepresentation | protected |
| setLinearSolver(SurgSim::Math::LinearSolver linearSolver) | SurgSim::Physics::DeformableRepresentation | |
| setLocalActive(bool val) | SurgSim::Framework::Component | virtual |
| setLocalPose(const SurgSim::Math::RigidTransform3d &pose) override | SurgSim::Physics::DeformableRepresentation | virtual |
| setMassLumping(bool useMassLumping) | SurgSim::Physics::FemRepresentation | |
| setName(const std::string &name) | SurgSim::Framework::Component | |
| setNumDof(size_t numDof) | SurgSim::Physics::Representation | protected |
| setRayleighDampingMass(double massCoef) | SurgSim::Physics::FemRepresentation | |
| setRayleighDampingStiffness(double stiffnessCoef) | SurgSim::Physics::FemRepresentation | |
| setScene(std::weak_ptr< Scene > scene) | SurgSim::Framework::Component | |
| setSceneElement(std::weak_ptr< SceneElement > sceneElement) | SurgSim::Framework::Component | |
| setSerializable(const std::string &name, EncoderType encoder, DecoderType decoder) | SurgSim::Framework::Accessible | |
| setSetter(const std::string &name, SetterType func) | SurgSim::Framework::Accessible | |
| SetterType typedef (defined in SurgSim::Framework::Accessible) | SurgSim::Framework::Accessible | |
| setValue(const std::string &name, const boost::any &value) | SurgSim::Framework::Accessible | |
| stiffnessCoefficient (defined in SurgSim::Physics::FemRepresentation) | SurgSim::Physics::FemRepresentation | |
| SURGSIM_CLASSNAME(SurgSim::Physics::Fem2DRepresentation) (defined in SurgSim::Physics::Fem2DRepresentation) | SurgSim::Physics::Fem2DRepresentation | |
| transformState(std::shared_ptr< SurgSim::Math::OdeState > state, const SurgSim::Math::RigidTransform3d &transform) override | SurgSim::Physics::Fem2DRepresentation | protectedvirtual |
| update(double dt) override | SurgSim::Physics::FemRepresentation | virtual |
| updateComplianceMatrix(const SurgSim::Math::OdeState &state) | SurgSim::Physics::FemRepresentation | protected |
| updateFMDK(const SurgSim::Math::OdeState &state, int options) override | SurgSim::Physics::FemRepresentation | virtual |
| wakeUp() | SurgSim::Framework::Component | |
| ~Accessible() | SurgSim::Framework::Accessible | |
| ~Component() | SurgSim::Framework::Component | virtual |
| ~DeformableRepresentation() | SurgSim::Physics::DeformableRepresentation | virtual |
| ~Fem2DRepresentation() | SurgSim::Physics::Fem2DRepresentation | virtual |
| ~FemRepresentation() | SurgSim::Physics::FemRepresentation | virtual |
| ~OdeEquation() | SurgSim::Math::OdeEquation | inlinevirtual |
| ~Representation() | SurgSim::Physics::Representation | virtual |